PXD006851

PXD006851 is an original dataset announced via ProteomeXchange.

Title	Lactobacillus mucosae LM1 and intestinal cell interaction
Description	In this study, we employed a gel-free proteomic approach to investigate proteome changes in both LM1 and IPEC-J2 cells after co-incubation. QExactive Orbitrap mass spectrometry (MS) was used for a full proteomic scan of bacterial and intestinal cells, and for a large-scale quantitative analysis of protein dynamics during host-microbe interaction. This is the first proteomic study to use this method to obtain novel insights into probiotic adhesion to IECs.
HostingRepository	PRIDE
AnnounceDate	2018-10-24
AnnouncementXML	Submission_2018-10-24_11:41:39.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Edward Pajarillo
SpeciesList	scientific name: Lactobacillus mucosae LM1; NCBI TaxID: 1130798; scientific name: Sus scrofa domesticus (domestic pig); NCBI TaxID: 9825;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2017-06-30 06:28:05	ID requested
⏵ 1	2018-10-24 11:41:41	announced

Pajarillo EAB, Kim SH, Valeriano VD, Lee JY, Kang DK, and Intestinal Epithelial Cells in Co-culture Revealed by Q Exactive-Based Quantitative Proteomics. Front Microbiol, 8():2459(2017) [pubmed]

curator keyword: Biological

submitter keyword: Lactobacillus, IPEC-J2, Label-free proteomics, host-microbe interaction

Dae-Kyung Kang
contact affiliation	Laboratory of Industrial Microbiology and Biotechnology, Department of Animal Resources Science, Dankook University
contact email	dkkang@dankook.ac.kr
lab head
Edward Pajarillo
contact affiliation	Florida A&M University
contact email	edward.pajarillo@famu.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD006851

PRIDE project URI

• PRIDE
  1. PXD006851
     1. Label: PRIDE project
     2. Name: Lactobacillus mucosae LM1 and intestinal cell interaction