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PXD006848

PXD006848 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitlePhotoperiodic control of the Arabidopsis proteome
DescriptionPlants respond to seasonal cues such as the photoperiod, to adapt to current conditions and to prepare for environmental changes in the season to come. To assess photoperiodic responses at the protein level, we quantified the proteome of the model plant Arabidopsis thaliana by mass spectrometry across four photoperiods. This revealed coordinated changes of abundance in the proteins of photosynthesis, primary metabolism and secondary metabolic processes such as pigment biosynthesis, consistent with higher metabolic activity in long photoperiods. Higher translation rates during the day than during the night likely contribute to these changes, but rhythmic RNA profiles will alter their effects. Photoperiodic control of protein levels might be greatest if high translation rates only coincide with high transcript levels in some photoperiods. We term this mechanism ‘translational coincidence’, mathematically model its components, and demonstrate its effect on the Arabidopsis proteome. Datasets from a green alga and a cyanobacterium suggest that this mechanism is general, contributing to the seasonal control of the proteome in many phototrophic organisms, and favouring RNA rhythms even for stable proteins.
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_04:38:59.628.xml
DigitalObjectIdentifierhttps://dx.doi.org/10.6019/PXD006848
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportSupported dataset by repository
PrimarySubmitterAlexander Graf
SpeciesList scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702;
ModificationListOxidation; Carbamidomethyl
InstrumentLTQ Orbitrap Velos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02017-06-30 05:14:37ID requested
12018-02-27 06:39:34announced
22019-02-12 08:31:46announcedUpdated publication reference for PubMed record(s): 29496885.
32024-10-22 04:39:07announced2024-10-22: Updated project metadata.
Publication List
Seaton DD, Graf A, Baerenfaller K, Stitt M, Millar AJ, Gruissem W, proteome reveals a translational coincidence mechanism. Mol Syst Biol, 14(3):e7962(2018) [pubmed]
10.15252/msb.20177962;
10.6019/PXD006848;
Keyword List
curator keyword: Biological
submitter keyword: Arabidopsis thaliana, shotgun proteomics, end of day, size fractionation, photoperiod, SDS PAGE
Contact List
Alexander Graf
contact affiliationPlant Proteomics Group, Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, 14476 Potsdam-Golm, Germany
contact emailgraf@mpimp-golm.mpg.de
lab head
Alexander Graf
contact affiliationMax Planck Institute of Molekular Plant Physiology
contact emailgraf@mpimp-golm.mpg.de
dataset submitter
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Dataset FTP location
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