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PXD006722

PXD006722 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleSpecter
DescriptionThese data cover all of the analyses described in the paper "Specter: linear deconvolution as a new paradigm for targeted analysis of data-independent acquisition mass spectrometry proteomics". Specifically, the data consist of - 20 DIA and DDA files from the HEK293T/synthetic phosphopeptides spike-in experiments - 10 DDA files, one for each of ten fractions of an E. coli lysate digest - 14 DIA files for the experiments involving mixtures of synthetic peptides - 11 DDA files for the isolated runs of these synthetic peptides - 84 DIA files for measurements of the phosphoproteome of perturbed PC3 cells - 10 DDA files for spectral library construction for the phosphoproteomics data - 3 DIA and 3 DDA files for analysis of an unfractionated E. coli lysate digest. See the spreadsheet "Specter Datasets Catalog.xlsx" for further descriptions and file metadata.
HostingRepositoryPRIDE
AnnounceDate2018-03-19
AnnouncementXMLSubmission_2018-04-04_03:57:16.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterRyan Peckner
SpeciesList scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListphosphorylated residue
InstrumentQ Exactive
Dataset History
RevisionDatetimeStatusChangeLog Entry
02017-06-15 02:15:21ID requested
12018-03-19 08:22:46announced
22018-04-04 03:57:17announcedUpdated publication reference for PubMed record(s): 29608554.
Publication List
Peckner R, Myers SA, Jacome ASV, Egertson JD, Abelin JG, MacCoss MJ, Carr SA, Jaffe JD, Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics. Nat Methods, 15(5):371-378(2018) [pubmed]
Keyword List
curator keyword: Technical, Biomedical
submitter keyword: Proteomics, data-independent acquisition
Contact List
Steven Carr
contact affiliationProteomics Platform, Broad Institute of MIT and Harvard
contact emailscarr@broadinstitute.org
lab head
Ryan Peckner
contact affiliationBroad Institute
contact emailrpeckner@broadinstitute.org
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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