PXD006722 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Specter |
Description | These data cover all of the analyses described in the paper "Specter: linear deconvolution as a new paradigm for targeted analysis of data-independent acquisition mass spectrometry proteomics". Specifically, the data consist of - 20 DIA and DDA files from the HEK293T/synthetic phosphopeptides spike-in experiments - 10 DDA files, one for each of ten fractions of an E. coli lysate digest - 14 DIA files for the experiments involving mixtures of synthetic peptides - 11 DDA files for the isolated runs of these synthetic peptides - 84 DIA files for measurements of the phosphoproteome of perturbed PC3 cells - 10 DDA files for spectral library construction for the phosphoproteomics data - 3 DIA and 3 DDA files for analysis of an unfractionated E. coli lysate digest. See the spreadsheet "Specter Datasets Catalog.xlsx" for further descriptions and file metadata. |
HostingRepository | PRIDE |
AnnounceDate | 2018-03-19 |
AnnouncementXML | Submission_2018-04-04_03:57:16.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Ryan Peckner |
SpeciesList | scientific name: Escherichia coli; NCBI TaxID: 562; scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | phosphorylated residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2017-06-15 02:15:21 | ID requested | |
1 | 2018-03-19 08:22:46 | announced | |
⏵ 2 | 2018-04-04 03:57:17 | announced | Updated publication reference for PubMed record(s): 29608554. |
Publication List
Peckner R, Myers SA, Jacome ASV, Egertson JD, Abelin JG, MacCoss MJ, Carr SA, Jaffe JD, Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics. Nat Methods, 15(5):371-378(2018) [pubmed] |
Keyword List
curator keyword: Technical, Biomedical |
submitter keyword: Proteomics, data-independent acquisition |
Contact List
Steven Carr |
contact affiliation | Proteomics Platform, Broad Institute of MIT and Harvard |
contact email | scarr@broadinstitute.org |
lab head | |
Ryan Peckner |
contact affiliation | Broad Institute |
contact email | rpeckner@broadinstitute.org |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD006722 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD006722
- Label: PRIDE project
- Name: Specter