PXD006662

PXD006662 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Proteomic characterization of transcription and splicing factors associated with a more invasive phenotype in colorectal cancer
Description	To find new transcription and splicing factors associated with the metastatic phenotype we used a concatenated tandem array of consensus transcription factors response elements (catTFRE) on nuclear extracts of colon cancer cell lines. We used two different isogenic pairs of colorectal metastatic cells, KM12SM/KM12C and SW620/480. Proteins were pulled-down using biotinylated DNA sequences and streptavidin beads and analyzed by LC-MSMS.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:16:13.824.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Consuelo Marín-Vicente
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	LTQ Orbitrap Velos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2017-06-06 07:14:56	ID requested
1	2017-11-15 01:35:38	announced
⏵ 2	2024-10-22 04:16:14	announced	2024-10-22: Updated project metadata.

Publication List

Torres S, Garc, í, a-Palmero I, Mar, í, n-Vicente C, Bartolom, é RA, Calvi, ñ, o E, Fern, á, ndez-Ace, ñ, ero MJ, Casal JI, Proteomic Characterization of Transcription and Splicing Factors Associated with a Metastatic Phenotype in Colorectal Cancer. J Proteome Res, 17(1):252-264(2018) [pubmed]
10.1021/acs.jproteome.7b00548;

Torres S, Garc, í, a-Palmero I, Mar, í, n-Vicente C, Bartolom, é RA, Calvi, ñ, o E, Fern, á, ndez-Ace, ñ, ero MJ, Casal JI, Proteomic Characterization of Transcription and Splicing Factors Associated with a Metastatic Phenotype in Colorectal Cancer. J Proteome Res, 17(1):252-264(2018) [pubmed]

10.1021/acs.jproteome.7b00548;

Keyword List

curator keyword: Biomedical
submitter keyword: Human, LC-MSMS, transcription, colon cancer, splicing, cell lines, metastasis

curator keyword: Biomedical

submitter keyword: Human, LC-MSMS, transcription, colon cancer, splicing, cell lines, metastasis

Contact List

J. Ignacio Casal Alvarez
contact affiliation	Department of Cellular and Molecular Medicine, Centro de Investigaciones Biológicas (CIB-CSIC), Madrid, Spain
contact email	icasal@cib.csic.es
lab head
Consuelo Marín-Vicente
contact affiliation	CIB-CSIC
contact email	cmarin@cib.csic.es
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD006662
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/11/PXD006662

PRIDE project URI

Repository Record List

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