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PXD006624

PXD006624 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleAllergenomic discovery pipeline for allergenic proteins complemented by large-scale genomic and proteomic resources
DescriptionDespite recent technological advances, novel allergen discovery is limited by the low abundance of particular allergenic proteins, the large diversity of allergen sources, and the high variability in patient IgE antibody reactivity due to study specific populations. Here we describe a comprehensive discovery pipeline for allergenic proteins that accounts for biological and molecular variability using allergenomics, high-throughput screening of genomic databases and high-resolution mass spectrometry.
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_05:33:28.018.xml
DigitalObjectIdentifierhttps://dx.doi.org/10.6019/PXD006624
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportSupported dataset by repository
PrimarySubmitterRoni Nugraha
SpeciesList scientific name: Crassostrea gigas (Pacific oyster) (Crassostrea angulata); NCBI TaxID: 29159;
ModificationListCarboxymethyl; Deamidated; Oxidation; Carbamidomethyl
InstrumentLTQ Orbitrap Elite
Dataset History
RevisionDatetimeStatusChangeLog Entry
02017-05-30 05:06:47ID requested
12022-02-23 08:35:53announced
22024-10-22 05:33:28announced2024-10-22: Updated project metadata.
Publication List
10.6019/PXD006624;
Keyword List
curator keyword: Biological
submitter keyword: proteomics, Pacific oyster, bioinformatics, genomics, transcriptomics, allergens, allergy,Allergenomic
Contact List
Andreas Lopata
contact affiliationCollege of Public Health, Medical and Veterinary Science James Cook University
contact emailandreas.lopata@jcu.edu.au
lab head
Roni Nugraha
contact affiliationMolecular Allergy Research Lab, James Cook University
contact emailroni.nugraha@my.jcu.edu.au
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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