PXD006624

PXD006624 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Allergenomic discovery pipeline for allergenic proteins complemented by large-scale genomic and proteomic resources
Description	Despite recent technological advances, novel allergen discovery is limited by the low abundance of particular allergenic proteins, the large diversity of allergen sources, and the high variability in patient IgE antibody reactivity due to study specific populations. Here we describe a comprehensive discovery pipeline for allergenic proteins that accounts for biological and molecular variability using allergenomics, high-throughput screening of genomic databases and high-resolution mass spectrometry.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:33:28.018.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD006624
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Roni Nugraha
SpeciesList	scientific name: Crassostrea gigas (Pacific oyster) (Crassostrea angulata); NCBI TaxID: 29159;
ModificationList	Carboxymethyl; Deamidated; Oxidation; Carbamidomethyl
Instrument	LTQ Orbitrap Elite

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2017-05-30 05:06:47	ID requested
1	2022-02-23 08:35:53	announced
⏵ 2	2024-10-22 05:33:28	announced	2024-10-22: Updated project metadata.

Publication List

10.6019/PXD006624;

10.6019/PXD006624;

Keyword List

curator keyword: Biological
submitter keyword: proteomics, Pacific oyster, bioinformatics, genomics, transcriptomics, allergens, allergy,Allergenomic

curator keyword: Biological

submitter keyword: proteomics, Pacific oyster, bioinformatics, genomics, transcriptomics, allergens, allergy,Allergenomic

Contact List

Andreas Lopata
contact affiliation	College of Public Health, Medical and Veterinary Science James Cook University
contact email	andreas.lopata@jcu.edu.au
lab head
Roni Nugraha
contact affiliation	Molecular Allergy Research Lab, James Cook University
contact email	roni.nugraha@my.jcu.edu.au
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD006624
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD006624

PRIDE project URI

Repository Record List

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