PXD006624 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Allergenomic discovery pipeline for allergenic proteins complemented by large-scale genomic and proteomic resources |
Description | Despite recent technological advances, novel allergen discovery is limited by the low abundance of particular allergenic proteins, the large diversity of allergen sources, and the high variability in patient IgE antibody reactivity due to study specific populations. Here we describe a comprehensive discovery pipeline for allergenic proteins that accounts for biological and molecular variability using allergenomics, high-throughput screening of genomic databases and high-resolution mass spectrometry. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_05:33:28.018.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD006624 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Roni Nugraha |
SpeciesList | scientific name: Crassostrea gigas (Pacific oyster) (Crassostrea angulata); NCBI TaxID: 29159; |
ModificationList | Carboxymethyl; Deamidated; Oxidation; Carbamidomethyl |
Instrument | LTQ Orbitrap Elite |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2017-05-30 05:06:47 | ID requested | |
1 | 2022-02-23 08:35:53 | announced | |
⏵ 2 | 2024-10-22 05:33:28 | announced | 2024-10-22: Updated project metadata. |
Publication List
Keyword List
curator keyword: Biological |
submitter keyword: proteomics, Pacific oyster, bioinformatics, genomics, transcriptomics, allergens, allergy,Allergenomic |
Contact List
Andreas Lopata |
contact affiliation | College of Public Health, Medical and Veterinary Science James Cook University |
contact email | andreas.lopata@jcu.edu.au |
lab head | |
Roni Nugraha |
contact affiliation | Molecular Allergy Research Lab, James Cook University |
contact email | roni.nugraha@my.jcu.edu.au |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD006624 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD006624
- Label: PRIDE project
- Name: Allergenomic discovery pipeline for allergenic proteins complemented by large-scale genomic and proteomic resources