PXD006588

PXD006588 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Proteogenomic of Blastocystis sp. subtype 4 isolate WR1
Description	description Blastocystis sp. is a highly prevalent anaerobic eukaryotic parasite of humans and animals. The genome of several representatives has been sequenced revealing specific traits such as an intriguing 3’-end processing of primary transcripts. We have acquired a first high-throughput proteomics dataset on the difficult to cultivate ST4 isolate WR1 and detected 2,761 proteins. We evidenced for the first time by proteogenomics a functional termination codon derived from transcript polyadenylation for seven different key cellular components.
HostingRepository	PRIDE
AnnounceDate	2017-09-11
AnnouncementXML	Submission_2017-09-11_02:19:59.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Jean ARMENGAUD
SpeciesList	scientific name: Blastocystis; NCBI TaxID: 12967;
ModificationList	monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive HF

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2017-05-25 01:58:31	ID requested
⏵ 1	2017-09-11 02:20:00	announced

Publication List

Armengaud J, Pible O, Gaillard JC, Cian A, Gantois N, Tan KSW, Chab, é M, Viscogliosi E, Proteogenomic Insights into the Intestinal Parasite Blastocystis sp. Subtype 4 Isolate WR1. Proteomics, 17(21):(2017) [pubmed]

Armengaud J, Pible O, Gaillard JC, Cian A, Gantois N, Tan KSW, Chab, é M, Viscogliosi E, Proteogenomic Insights into the Intestinal Parasite Blastocystis sp. Subtype 4 Isolate WR1. Proteomics, 17(21):(2017) [pubmed]

Keyword List

curator keyword: Metaproteomics
submitter keyword: Functional termination codon, High resolution MS/MS datasets, Intestinal anaerobe, Parasites, Proteogenomics

curator keyword: Metaproteomics

submitter keyword: Functional termination codon, High resolution MS/MS datasets, Intestinal anaerobe, Parasites, Proteogenomics

Contact List

Jean Armengaud
contact affiliation	CEA-Marcoule, DRF-Li2D, 30200 Bagnols-sur-Cèze, France
contact email	jean.armengaud@cea.fr
lab head
Jean ARMENGAUD
contact affiliation	Li2D
contact email	jean.armengaud@cea.fr
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/09/PXD006588
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/09/PXD006588

PRIDE project URI

Repository Record List

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