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DataSet Summary

  • HostingRepository: PRIDE
  • AnnounceDate: 2018-03-13
  • AnnouncementXML: Submission_2018-03-13_03:02:54.xml
  • DigitalObjectIdentifier:
  • ReviewLevel: Peer-reviewed dataset
  • DatasetOrigin: Original data
  • RepositorySupport: Unsupported dataset by repository
  • PrimarySubmitter: Pekka Rappu
  • Title: Analysis of extracellular matrix proteins from 3D cultures of primary prostate fibroblasts, DU145 cells and mixed cells
  • Description: Composition and organization of extracellular matrix (ECM) in tumor stroma are important regulators of cancer cell behavior. Therefore, ECM produced by cancer associated fibroblasts is often used in in vitro experiments. Here, a proteome wide analysis of ECM proteins in 3D culture is analysed.
  • SpeciesList: scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
  • ModificationList: monohydroxylated residue; iodoacetamide derivatized residue
  • Instrument: Q Exactive

Dataset History

VersionDatetimeStatusChangeLog Entry
02017-05-22 07:46:50ID requested
12018-03-13 03:02:56announced

Publication List

  1. Ojalill M, Rappu P, Siljamäki E, Taimen P, Boström P, Heino J, The composition of prostate core matrisome in vivo and in vitro unveiled by mass spectrometric analysis. Prostate, 78(8):583-594(2018) [pubmed]

Keyword List

  1. curator keyword: Biomedical
  2. submitter keyword: 3D culture, extracellular matrix, fibroblast, prostate cancer

Contact List

    Jyrki Heino
    • contact affiliation: Department of Biochemistry, University of Turku, Turku, FINLAND
    • contact email: jyrki.heino@utu.fi
    • lab head:
    Pekka Rappu
    • contact affiliation: University of Turku
    • contact email: pekka.rappu@utu.fi
    • dataset submitter:

Full Dataset Link List

  1. Dataset FTP location
  2. PRIDE project URI
Repository Record List

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