PXD006563

PXD006563 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Analysis of extracellular matrix proteins from 3D cultures of primary prostate fibroblasts, DU145 cells and mixed cells
Description	Composition and organization of extracellular matrix (ECM) in tumor stroma are important regulators of cancer cell behavior. Therefore, ECM produced by cancer associated fibroblasts is often used in in vitro experiments. Here, a proteome wide analysis of ECM proteins in 3D culture is analysed.
HostingRepository	PRIDE
AnnounceDate	2018-03-13
AnnouncementXML	Submission_2018-03-13_03:02:54.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Pekka Rappu
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2017-05-22 07:46:50	ID requested
⏵ 1	2018-03-13 03:02:56	announced

Publication List

Ojalill M, Rappu P, Siljam, ä, ki E, Taimen P, Bostr, ö, m P, Heino J, The composition of prostate core matrisome in vivo and in vitro unveiled by mass spectrometric analysis. Prostate, 78(8):583-594(2018) [pubmed]

Ojalill M, Rappu P, Siljam, ä, ki E, Taimen P, Bostr, ö, m P, Heino J, The composition of prostate core matrisome in vivo and in vitro unveiled by mass spectrometric analysis. Prostate, 78(8):583-594(2018) [pubmed]

Keyword List

curator keyword: Biomedical
submitter keyword: 3D culture, extracellular matrix, fibroblast, prostate cancer

curator keyword: Biomedical

submitter keyword: 3D culture, extracellular matrix, fibroblast, prostate cancer

Contact List

Jyrki Heino
contact affiliation	Department of Biochemistry, University of Turku, Turku, FINLAND
contact email	jyrki.heino@utu.fi
lab head
Pekka Rappu
contact affiliation	University of Turku
contact email	pekka.rappu@utu.fi
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD006563
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/03/PXD006563

PRIDE project URI

Repository Record List

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