PXD006526

PXD006526 is an original dataset announced via ProteomeXchange.

Title	Quantitative Proteomic Atlas Uncovering the widespread Ubiquitylation regulation in the Embryo of Germinating Rice Seed
Description	Using high affinity K-Ɛ-GG antibody integrating highly sensitive MS, we investigated the quantitative atlas of ubiquitylome as well as the proteome in the embryos of germinated rice seed. A total of 7507 proteins were identified, and 5018 were precisely quantified, the mass errors and peptides length distribution showed the high mass accuracy, andthe PCA result displayed the well repeatability (Figure S3, Table S2). Of these quantified proteins, 764(65.3%) were found in the ubiquitylome, this high overlapping ascribed to the high resolution of MS.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:33:38.153.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Dongli He
SpeciesList	scientific name: Oryza sativa (Rice); NCBI TaxID: 4530;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2017-05-16 03:28:16	ID requested
1	2022-02-23 09:06:14	announced
⏵ 2	2024-10-22 05:33:38	announced	2024-10-22: Updated project metadata.

Dataset with its publication pending

curator keyword: Biological

submitter keyword: Rice, Seed Germination,lysine ubiquitylation, Quantitative proteome, Embryo

Pingfang Yang
contact affiliation	Key Laboratory of Plant Germplasm Enhancement and Speciality Agriculture, Wuhan Botanical Garden, Sino-African Joint Research Center, Chinese Academy of Sciences, Wuhan 430074, China
contact email	yangpf@wbgcas.cn
lab head
Dongli He
contact affiliation	Wuhan Botanic Garden
contact email	hedongli@wbgcas.cn
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/02/PXD006526

PRIDE project URI

• PRIDE
  1. PXD006526
     1. Label: PRIDE project
     2. Name: Quantitative Proteomic Atlas Uncovering the widespread Ubiquitylation regulation in the Embryo of Germinating Rice Seed