PXD006506 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Mammoth Hot Spring, Yellowstone National Park |
Description | The thermophilic Aquificales inhabit and play important biogeochemical roles in the geothermal environments globally. Although intensive studies on physiology, microbial ecology, biochemistry, metagenomics and metatranscriptomics of the Aquificales¬ species and Aquificales-containing environmental samples have been conducted, comprehensive understandings about their ecophysiology, especially in the natural niches have been limited. In the present study, an integrated suite of metagenomic, metatranscriptomic and metaproteomic analyses, for the first time, were conducted on a filamentous microbial community from the Apron and Channel Facies (ACF) of CaCO3 (travertine) deposition at Narrow Gauge, Mammoth Hot Springs, Yellowstone National Park. |
HostingRepository | PRIDE |
AnnounceDate | 2020-05-26 |
AnnouncementXML | Submission_2020-05-26_11:08:09.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD006506 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Yiran Dong |
SpeciesList | scientific name: Sulfurihydrogenibium; NCBI TaxID: 212790; |
ModificationList | Oxidation |
Instrument | LTQ |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2017-05-12 03:25:35 | ID requested | |
⏵ 1 | 2020-05-26 11:08:10 | announced | |
Publication List
Dong Y, Sanford RA, Inskeep WP, Srivastava V, Bulone V, Fields CJ, Yau PM, Sivaguru M, Ahr, é, n D, Fouke KW, Weber J, Werth CR, Cann IK, Keating KM, Khetani RS, Hernandez AG, Wright C, Band M, Imai BS, Fried GA, Fouke BW, Physiology, Metabolism, and Fossilization of Hot-Spring Filamentous Microbial Mats. Astrobiology, 19(12):1442-1458(2019) [pubmed] |
Keyword List
ProteomeXchange project tag: Extreme Conditions (B/D-HPP) |
curator keyword: Biological |
submitter keyword: Hot springs, proteomics, microbiome, ecophysiology, urea |
Contact List
Bruce W. Fouke, Yiran Dong |
contact affiliation | University of Illinois Urbana-Champaign |
contact email | dong5600@illinois.edu |
lab head | |
Yiran Dong |
contact affiliation | University of Illinois Urbana-Champaign |
contact email | dong5600@illinois.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD006506 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD006506
- Label: PRIDE project
- Name: Mammoth Hot Spring, Yellowstone National Park