PXD006504

PXD006504 is an original dataset announced via ProteomeXchange.

Title	Yellowstone National Park Mammoth Hot Spring-EDTA
Description	The thermophilic Aquificales inhabit and play important biogeochemical roles in the geothermal environments globally. Although intensive studies on physiology, microbial ecology, biochemistry, metagenomics and metatranscriptomics of the Aquificales¬ species and Aquificales-containing environmental samples have been conducted, comprehensive understandings about their ecophysiology, especially in the natural niches have been limited. In the present study, an integrated suite of metagenomic, metatranscriptomic and metaproteomic analyses, for the first time, were conducted on a filamentous microbial community from the Apron and Channel Facies (ACF) of CaCO3 (travertine) deposition at Narrow Gauge, Mammoth Hot Springs, Yellowstone National Park.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_05:04:33.932.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD006504
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Yiran Dong
SpeciesList	scientific name: Sulfurihydrogenibium; NCBI TaxID: 212790;
ModificationList	Oxidation
Instrument	LTQ

Revision	Datetime	Status	ChangeLog Entry
0	2017-05-12 03:10:09	ID requested
1	2020-05-26 11:07:22	announced
⏵ 2	2024-10-22 05:04:37	announced	2024-10-22: Updated project metadata.

Dong Y, Sanford RA, Inskeep WP, Srivastava V, Bulone V, Fields CJ, Yau PM, Sivaguru M, Ahr, é, n D, Fouke KW, Weber J, Werth CR, Cann IK, Keating KM, Khetani RS, Hernandez AG, Wright C, Band M, Imai BS, Fried GA, Fouke BW, Physiology, Metabolism, and Fossilization of Hot-Spring Filamentous Microbial Mats. Astrobiology, 19(12):1442-1458(2019) [pubmed]

10.1089/ast.2018.1965;

10.6019/PXD006504;

ProteomeXchange project tag: Extreme Conditions (B/D-HPP)

curator keyword: Biological

submitter keyword: proteomics, microbiome,Hot springs

Yiran Dong
contact affiliation	University of Illinois Urbana-Champaign
contact email	dong5600@illinois.edu
lab head
Yiran Dong
contact affiliation	University of Illinois Urbana-Champaign
contact email	dong5600@illinois.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD006504

PRIDE project URI

• PRIDE
  1. PXD006504
     1. Label: PRIDE project
     2. Name: Yellowstone National Park Mammoth Hot Spring-EDTA