PXD006493
PXD006493 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Spectral library of Solanum lycopersicum for SWATH-MS |
| Description | A spectral library was built for Solanum lycopersicum. The spectral library allows reproducible quantification for thousands of peptides per SWATH-MS analysis. Proteins from Solanum lycopersicum pericarp were digested with trypsin using in-gel digestion and the peptides were fractionated by high-pH reverse phase chromatography. HRM peptides were spiked into the peptides mixture and each fraction was injected on a Sciex TripleTOF 6600 mass spectrometer fitted with microflow set-up. The resulting .wiff files were analysed using MaxQuant and Spectronaut. |
| HostingRepository | MassIVE |
| AnnounceDate | 2017-11-01 |
| AnnouncementXML | Submission_2017-11-01_08:32:19.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | Bertrand Fabre |
| SpeciesList | scientific name: Solanum lycopersicum; NCBI TaxID: 4081; |
| ModificationList | Carbamidomethyl; Oxidation |
| Instrument | TripleTOF 6600 |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2017-05-11 04:04:24 | ID requested | |
| ⏵ 1 | 2017-11-01 08:32:20 | announced |
Publication List
| Fabre B, Korona D, Mata CI, Parsons HT, Deery MJ, Hertog MLATM, Nicola, ï BM, Russell S, Lilley KS, Spectral Libraries for SWATH-MS Assays for Drosophila melanogaster and Solanum lycopersicum. Proteomics, 17(21):(2017) [pubmed] |
Keyword List
| submitter keyword: Spectral library, SWATH-MS, Solanum lycopersicum |
Contact List
| Kathryn Susan Lilley | |
|---|---|
| contact affiliation | Cambridge Centre for Proteomics, Cambridge Systems Biology Centre, University of Cambridge |
| contact email | k.s.lilley@bioc.cam.ac.uk |
| lab head | |
| Bertrand Fabre | |
| contact affiliation | Technion |
| contact email | bertrandfabre31@gmail.com |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000081074 |
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