PXD006447

PXD006447 is an original dataset announced via ProteomeXchange.

Title	Standard dataset of UPS1 spiked into yeast at various concentrations
Description	A standard proteolytic digest of a human protein mixture, prepared at 1.5-fold to 3-fold protein concentration changes, and diluted into a constant background of yeast proteins. Similar to other datasets used for ground truth in quantitative studies, with the exception of being more granular, and much larger in terms of replicates, to enable more rigorous and accurate testing of quantitative algorithms.
HostingRepository	PRIDE
AnnounceDate	2018-09-24
AnnouncementXML	Submission_2018-09-28_08:47:45.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Michael Hoopmann
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2017-05-04 00:12:43	ID requested
1	2018-09-24 03:54:30	announced
⏵ 2	2018-09-28 08:47:46	announced	Updated publication reference for PubMed record(s): 30259924.

Slama P, Hoopmann MR, Moritz RL, Geman D, Robust determination of differential abundance in shotgun proteomics using nonparametric statistics. Mol Omics, 14(6):424-436(2018) [pubmed]

curator keyword: Technical

submitter keyword: UPS1, yeast, standard, dilution series

Robert L. Moritz
contact affiliation	Institute for Systems Biology
contact email	robert.moritz@systemsbiology.org
lab head
Michael Hoopmann
contact affiliation	Institute for Systems Biology
contact email	michael.hoopmann@systemsbiology.org
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/09/PXD006447

PRIDE project URI

• PRIDE
  1. PXD006447
     1. Label: PRIDE project
     2. Name: Standard dataset of UPS1 spiked into yeast at various concentrations