PXD006403

PXD006403 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Glycopeptides from recombinant EBV gH, gL and gp42 with EThcD
Description	Soluble ectodomains of Epstein Barr Virus glycoproteins gH/gL and gp42 were expressed in HEK293F cells for structural characterization by cryo electron microscopy. The purified material was additionally analyzed by LC-MS/MS after digestion with trypsin or chymotrypsin to identify N-linked glycosylation from EThcD glycopeptide fragmentation spectra.
HostingRepository	PRIDE
AnnounceDate	2018-04-10
AnnouncementXML	Submission_2018-04-25_06:36:45.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Joost Snijder
SpeciesList	scientific name: Human herpesvirus 4; NCBI TaxID: 10376;
ModificationList	complex glycosylation
Instrument	Orbitrap Fusion ETD

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2017-04-28 01:43:19	ID requested
1	2018-04-10 00:18:01	announced
⏵ 2	2018-04-25 06:36:47	announced	Updated publication reference for PubMed record(s): 29669253.

Publication List

Snijder J, Ortego MS, Weidle C, Stuart AB, Gray MD, McElrath MJ, Pancera M, Veesler D, McGuire AT, An Antibody Targeting the Fusion Machinery Neutralizes Dual-Tropic Infection and Defines a Site of Vulnerability on Epstein-Barr Virus. Immunity, 48(4):799-811.e9(2018) [pubmed]

Snijder J, Ortego MS, Weidle C, Stuart AB, Gray MD, McElrath MJ, Pancera M, Veesler D, McGuire AT, An Antibody Targeting the Fusion Machinery Neutralizes Dual-Tropic Infection and Defines a Site of Vulnerability on Epstein-Barr Virus. Immunity, 48(4):799-811.e9(2018) [pubmed]

Keyword List

curator keyword: Biological
submitter keyword: glycopeptide
epstein barr virus

curator keyword: Biological

submitter keyword: glycopeptide

epstein barr virus

Contact List

David Veesler
contact affiliation	University of Washington
contact email	dveesler@uw.edu
lab head
Joost Snijder
contact affiliation	University of Washington
contact email	joost.snijder@gmail.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/04/PXD006403
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/04/PXD006403

PRIDE project URI

Repository Record List

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