PXD006366 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Re-analysis of an ultra-deep and quantitative saliva proteome |
Description | This is a re-analysis of the saliva metaproteome dataset by Grassl et al. (Grassl et al. 2016 Genome Med, 8(1):44 DOI: 10.1186/s13073-016-0293-0) available on ProteomeXchange PXD003028. The data was used as a case study for a method development study in which we developed metaproteomics based methods for quantifying taxonomic composition of microbiomes (microbial communities). We used the fraction data from the original study for individuals 1 (female1), 3 (female3), 5 (male1), and 7 (male3). |
HostingRepository | PRIDE |
AnnounceDate | 2017-05-12 |
AnnouncementXML | Submission_2017-11-22_08:35:42.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Manuel Kleiner |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Bacteria; NCBI TaxID: 2; |
ModificationList | No PTMs are included in the dataset |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2017-04-24 06:08:46 | ID requested | |
1 | 2017-05-11 23:34:22 | announced | |
⏵ 2 | 2017-11-22 08:35:44 | announced | Updated publication reference for PubMed record(s): 29146960. |
Publication List
Kleiner M, Thorson E, Sharp CE, Dong X, Liu D, Li C, Strous M, Assessing species biomass contributions in microbial communities via metaproteomics. Nat Commun, 8(1):1558(2017) [pubmed] |
Keyword List
curator keyword: Metaproteomics, Biological |
submitter keyword: metaproteomics, metaproteome, biomass assessment, oral microbiome |
Contact List
Marc Strous |
contact affiliation | Department of Geoscience, University of Calgary |
contact email | mstrous@ucalgary.ca |
lab head | |
Manuel Kleiner |
contact affiliation | University of Calgary |
contact email | manuel.kleiner@ucalgary.ca |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/05/PXD006366 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD006366
- Label: PRIDE project
- Name: Re-analysis of an ultra-deep and quantitative saliva proteome