PXD006343

PXD006343 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Metaproteomics of phototrophic biomats from two soda lakes in the Canadian Rocky Mountains
Description	This data is a case study done in the context of developing methods for assessing the taxonomic composition of microbial communities using metaproteomics. For this study with analyzed phototrophic biomats from two Soda Lakes in the Canadian Rocky Mountains using metaproteomics. For protein identification we generated a metagenome from which we predicted and annotated the protein sequences used to analyze the metaproteomes. The database is available in this PRIDE submission. Lake1 refers to Goodenough Lake (GEM, 51°19'47.64"N 121°38'28.90"W) and Lake2 referes to Last Chance Lake (LCM, 51°19'39.3" N 121°37'59.3"W).
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:36:45.083.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Manuel Kleiner
SpeciesList	scientific name: Archaea; NCBI TaxID: 2157; scientific name: Eukaryota (eucaryotes); NCBI TaxID: 2759; scientific name: Viruses; NCBI TaxID: 10239; scientific name: Bacteria; NCBI TaxID: 2;
ModificationList	monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2017-04-20 06:27:20	ID requested
1	2017-05-11 23:41:32	announced
2	2017-06-20 05:44:54	announced	Updated project metadata.
3	2017-11-22 08:35:19	announced	Updated project metadata.
⏵ 4	2024-10-22 04:36:53	announced	2024-10-22: Updated project metadata.

Publication List

10.1038/s41467-017-01544-x;
Kleiner M, Thorson E, Sharp CE, Dong X, Liu D, Li C, Strous M, Assessing species biomass contributions in microbial communities via metaproteomics. Nat Commun, 8(1):1558(2017) [pubmed]

10.1038/s41467-017-01544-x;

Kleiner M, Thorson E, Sharp CE, Dong X, Liu D, Li C, Strous M, Assessing species biomass contributions in microbial communities via metaproteomics. Nat Commun, 8(1):1558(2017) [pubmed]

Keyword List

curator keyword: Biological
submitter keyword: 1D-LC, metaproteome, metagenomics, biomass assessment, metaproteomics

curator keyword: Biological

submitter keyword: 1D-LC, metaproteome, metagenomics, biomass assessment, metaproteomics

Contact List

Marc Strous
contact affiliation	Department of Geoscience, University of Calgary
contact email	mstrous@ucalgary.ca
lab head
Manuel Kleiner
contact affiliation	North Carolina State University
contact email	manuel_kleiner@ncsu.edu
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/05/PXD006343
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/05/PXD006343

PRIDE project URI

Repository Record List

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