PXD006256

PXD006256 is an original dataset announced via ProteomeXchange.

Title	Proteomic profiling of archeological human bone
Description	We performed shotgun proteomics of human remains using rib bones from the Hitotsubashi site (1657–1683 AD) in Tokyo, called Edo in ancient times. Two infants and six adults, including four elderly adults, were obtained from the skeletal collection of the Hitotsubashi site in Tokyo, Japan. The individuals buried in this graveyard are townspeople, known from the fact that the largest proportion of graves consisted of the wooden coffins typically used for the lower social classes. The sex and age at death of the adult skeletons were estimated using the diagnostic standards of Nagaoka and Hirata (Nagaoka et al., 2007). Sex was determined by the sexual dimorphism of the pelvis (e.g., Bruzek, 2002). This study estimated age at death for each individual by the observation of the auricular surface of the ilium using the method of Buckberry and Chamberlain. Each obtained stage of the auricular surface of the ilium is then transformed into an average age at death with standard deviation shown in the data of Buckberry and Chamberlain. The age at death of sub-adults was estimated by the degree of formation and eruption of teeth.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_08:49:23.682.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Rikai Sawafuji
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	2-pyrrolidone-5-carboxylic acid (Glu); 4-hydroxy-L-proline; 2-pyrrolidone-5-carboxylic acid (Gln); monohydroxylated residue; iodoacetamide derivatized residue; deamidated residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2017-04-04 06:04:44	ID requested
1	2017-06-07 23:41:04	announced
2	2017-06-23 01:04:18	announced	Updated publication reference for DOI(s): http://dx.doi.org/10.1098/rsos.161004.
3	2017-08-06 23:58:02	announced	Updated project metadata.
⏵ 4	2023-11-14 08:49:24	announced	2023-11-14: Updated project metadata.

Dataset with its publication pending

curator keyword: Biological

submitter keyword: bone, human, Edo period,ancient proteins

Shintaroh Ueda
contact affiliation	Department of Biological Sciences, Graduate School of Science, the Uni- versity of Tokyo, 7–3–1 Hongo, Bunkyo-ku, Tokyo 113–0033, Japan.
contact email	sueda@bs.s.u-tokyo.ac.jp
lab head
Rikai Sawafuji
contact affiliation	The University of Tokyo
contact email	rikai.biol@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/06/PXD006256

PRIDE project URI

• PRIDE
  1. PXD006256
     1. Label: PRIDE project
     2. Name: Proteomic profiling of archeological human bone