PXD006192

PXD006192 is an original dataset announced via ProteomeXchange.

Title	Salt stress phosphorylation network
Description	We utilized high resolution, high mass accuracy quantitative proteomics to explore stress signaling in yeast. We accessed changes in protein phosphorylation at various time points after exposure to salt stress and used this information to reconstruct stress signaling networks. We performed similar experiments using yeast knockouts to monitor network re-wiring and performed co-IPs to validate protein-protein interactions predicted by the networks.
HostingRepository	PRIDE
AnnounceDate	2018-04-05
AnnouncementXML	Submission_2018-05-23_01:09:18.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Evgenia Shishkova
SpeciesList	scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932;
ModificationList	phosphorylated residue
Instrument	Orbitrap Fusion ETD; LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2017-03-28 01:46:09	ID requested
1	2018-04-05 02:55:42	announced
⏵ 2	2018-05-23 01:09:19	announced	Updated publication reference for PubMed record(s): 29738528.

MacGilvray ME, Shishkova E, Chasman D, Place M, Gitter A, Coon JJ, Gasch AP, Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response. PLoS Comput Biol, 13(5):e1006088(2018) [pubmed]

curator keyword: Biological

submitter keyword: Phosphorylation, stress signaling, yeast, environmental stress response

Joshua J Coon
contact affiliation	Professor of Biomolecular Chemistry at the University of Wisconsin-Madison
contact email	jcoon@chem.wisc.edu
lab head
Evgenia Shishkova
contact affiliation	University of Wisconsin - Madison
contact email	shishkova@wisc.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/04/PXD006192

PRIDE project URI

• PRIDE
  1. PXD006192
     1. Label: PRIDE project
     2. Name: Salt stress phosphorylation network