PXD006084

PXD006084 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Genes essential for phototrophic growth by a purple alphaproteobacterium
Description	We identified 171 genes required for growth in this condition, 35 of which are annotated as photosynthesis genes. As a complement to the genetic data, we carried out proteomics experiments in which we found that 429 proteins were present in significantly higher amounts in cells grown anaerobically in light compared to aerobically. Among these were proteins encoded by subset of the phototrophic growth-essential genes.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:08:49.884.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD006084
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Matthew Monroe
SpeciesList	scientific name: Rhodopseudomonas palustris; NCBI TaxID: 1076;
ModificationList	Oxidation
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2017-03-13 04:37:10	ID requested
1	2017-07-11 05:41:58	announced
⏵ 2	2024-10-22 04:08:58	announced	2024-10-22: Updated project metadata.

Publication List

10.1111/1462-2920.13852;
10.6019/PXD006084;
Yang J, Yin L, Lessner FH, Nakayasu ES, Payne SH, Fixen KR, Gallagher L, Harwood CS, Genes essential for phototrophic growth by a purple alphaproteobacterium. Environ Microbiol, 19(9):3567-3578(2017) [pubmed]

10.1111/1462-2920.13852;

10.6019/PXD006084;

Yang J, Yin L, Lessner FH, Nakayasu ES, Payne SH, Fixen KR, Gallagher L, Harwood CS, Genes essential for phototrophic growth by a purple alphaproteobacterium. Environ Microbiol, 19(9):3567-3578(2017) [pubmed]

Keyword List

curator keyword: Biological
submitter keyword: photosynthesis, bacteria, essential genes

curator keyword: Biological

submitter keyword: photosynthesis, bacteria, essential genes

Contact List

Carrie Harwood
contact affiliation	University of Washington, USA
contact email	csh5@uw.edu
lab head
Matthew Monroe
contact affiliation	Pacific Northwest National Laboratory
contact email	matthew.monroe@pnnl.gov
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/07/PXD006084
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/07/PXD006084

PRIDE project URI

Repository Record List

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