PXD006057

PXD006057 is an original dataset announced via ProteomeXchange.

Title	Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS: 14-3-3 data set
Description	This data set represent an experiment assessing protein-protein interaction dynamics of the 14-3-3 with a focus on phosphorylation.
HostingRepository	PRIDE
AnnounceDate	2017-06-12
AnnouncementXML	Submission_2017-06-19_08:18:00.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	George Rosenberger
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	phosphorylated residue
Instrument	TripleTOF 5600

Revision	Datetime	Status	ChangeLog Entry
0	2017-03-08 07:08:57	ID requested
1	2017-06-11 23:50:41	announced
⏵ 2	2017-06-19 08:18:02	announced	Updated publication reference for PubMed record(s): 28604659, 24162925.

Collins BC, Gillet LC, Rosenberger G, R, ö, st HL, Vichalkovski A, Gstaiger M, Aebersold R, Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system. Nat Methods, 10(12):1246-53(2013) [pubmed]

Rosenberger G, Liu Y, R, ö, st HL, Ludwig C, Buil A, Bensimon A, Soste M, Spector TD, Dermitzakis ET, Collins BC, Malmstr, ö, m L, Aebersold R, Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS. Nat Biotechnol, 35(8):781-788(2017) [pubmed]

curator keyword: Technical, Biological

submitter keyword: 14-3-3, AP-MS, AP-SWATH, kinase, human, phosphopeptides, benchmark, OpenSWATH, IPF

Ruedi Aebersold
contact affiliation	ETH Zurich Prof. Dr. Ruedi Aebersold Institute of Molecular Systems Biology Head of Department of Biology HPT E 78 Auguste-Piccard-Hof 1 CH-8093 Zurich Switzerland
contact email	aebersold@imsb.biol.ethz.ch
lab head
George Rosenberger
contact affiliation	Institute of Molecular Systems Biology ETH Zurich
contact email	rosenberger@imsb.biol.ethz.ch
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/06/PXD006057

PRIDE project URI

• PRIDE
  1. PXD006057
     1. Label: PRIDE project
     2. Name: Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS: 14-3-3 data set