PXD006056

PXD006056 is an original dataset announced via ProteomeXchange.

Title	Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS: Phosphopeptide-enriched data set
Description	This data set represent an experiment comparing enriched phosphopeptides of a human U2OS cell line. Phosphopeptide-enriched samples of ten nocodazole treated and ten control U2OS cell line samples were acquired each in DDA and DIA (SWATH-MS) modes.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:08:41.703.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	George Rosenberger
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	phosphorylated residue
Instrument	TripleTOF 6600

Revision	Datetime	Status	ChangeLog Entry
0	2017-03-08 07:01:26	ID requested
1	2017-06-12 00:54:43	announced
2	2017-06-19 08:14:47	announced	Updated publication reference for PubMed record(s): 28604659.
⏵ 3	2024-10-22 04:08:46	announced	2024-10-22: Updated project metadata.

10.1038/nbt.3908;

Rosenberger G, Liu Y, R, ö, st HL, Ludwig C, Buil A, Bensimon A, Soste M, Spector TD, Dermitzakis ET, Collins BC, Malmstr, ö, m L, Aebersold R, Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS. Nat Biotechnol, 35(8):781-788(2017) [pubmed]

curator keyword: Technical, Biological

submitter keyword: phosphopeptides, IPF, OpenSWATH, benchmark,human

Ruedi Aebersold
contact affiliation	ETH Zurich Prof. Dr. Ruedi Aebersold Institute of Molecular Systems Biology Head of Department of Biology HPT E 78 Auguste-Piccard-Hof 1 CH-8093 Zurich Switzerland
contact email	aebersold@imsb.biol.ethz.ch
lab head
George Rosenberger
contact affiliation	Columbia University
contact email	gr2578@cumc.columbia.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/06/PXD006056

PRIDE project URI

• PRIDE
  1. PXD006056
     1. Label: PRIDE project
     2. Name: Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS: Phosphopeptide-enriched data set