PXD005892 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Investigating Reporter Ion Signal Characteristics in Isobaric Mass Tag Proteome Quantification Experiments |
Description | In this study we sought to examine the characteristics of the reporter ion signal obtained using current generation OT-based MS hardware. We initially focus on re-analysis of a previous experiment where TMT was using in combination with OT-MS3 to study protein expression diversity between histotypes of ovarian carcinoma where the presence of a notch – a region with no reported values – was observed in the reporter ion signal distributions. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_04:36:10.298.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Christopher Hughes |
SpeciesList | scientific name: Ralstonia eutropha JMP134; NCBI TaxID: 264198; scientific name: Yarrowia lipolytica (Candida lipolytica); NCBI TaxID: 4952; scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | TMT6plex-126 reporter+balance reagent acylated residue; monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Orbitrap Fusion ETD |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2017-02-09 01:41:56 | ID requested | |
1 | 2017-05-02 05:02:44 | announced | |
⏵ 2 | 2024-10-22 04:36:11 | announced | 2024-10-22: Updated project metadata. |
Publication List
10.1021/acs.jproteome.7b00092; |
Hughes CS, Zhu C, Spicer V, Krokhin OV, Morin GB, Evaluating the Characteristics of Reporter Ion Signal Acquired in the Orbitrap Analyzer for Isobaric Mass Tag Proteome Quantification Experiments. J Proteome Res, 16(5):1831-1838(2017) [pubmed] |
Keyword List
curator keyword: Technical |
submitter keyword: MS3,TMT, Orbitrap Fusion |
Contact List
Gregg Morin |
contact affiliation | Head of Proteomics |
contact email | gmorin@bcgsc.ca |
lab head | |
Christopher Hughes |
contact affiliation | BC Cancer Agency |
contact email | chughes@bcgsc.ca |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/04/PXD005892 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD005892
- Label: PRIDE project
- Name: Investigating Reporter Ion Signal Characteristics in Isobaric Mass Tag Proteome Quantification Experiments