PXD005851 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Acetylation of Diverse Bacteria |
Description | We sampled global bottom up proteomics data from 48 diverse bacteria and searched for sites of lysine acetylation. Bacteria came from 6 phyla: proteobacteria, cyanobacteria, firmicutes, bacteroidetes, actinobacteria, and fibrobacteres. |
HostingRepository | PRIDE |
AnnounceDate | 2017-10-17 |
AnnouncementXML | Submission_2017-10-17_02:38:27.xml |
DigitalObjectIdentifier | http://dx.doi.org/10.6019/PXD005851 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Matthew Monroe |
SpeciesList | scientific name: Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078); NCBI TaxID: 593907; scientific name: Cyanobacterium stanieri; NCBI TaxID: 102235; scientific name: Francisella tularensis subsp. novicida (strain U112); NCBI TaxID: 401614; scientific name: Prevotella ruminicola (strain ATCC 19189 / JCM 8958 / 23); NCBI TaxID: 264731; scientific name: Faecalibacterium prausnitzii SL3/3; NCBI TaxID: 657322; scientific name: bacteria; NCBI TaxID: 1666912; scientific name: Fibrobacter succinogenes subsp. succinogenes S85; NCBI TaxID: 59374; scientific name: Campylobacter jejuni; NCBI TaxID: 197; scientific name: Bacillus subtilis subsp. subtilis str. 168; NCBI TaxID: 224308; scientific name: Cellulophaga baltica 18; NCBI TaxID: 1348584; scientific name: Micrococcus luteus (Micrococcus lysodeikticus); NCBI TaxID: 1270; scientific name: Stigmatella aurantiaca (strain DW4/3-1); NCBI TaxID: 378806; scientific name: bacteria; NCBI TaxID: 1486246; scientific name: Legionella pneumophila; NCBI TaxID: 446; scientific name: Anaerococcus hydrogenalis DSM 7454; NCBI TaxID: 561177; scientific name: Streptomyces sp.; NCBI TaxID: 1931; scientific name: Citrobacter freundii; NCBI TaxID: 546; scientific name: Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia eutropha); NCBI TaxID: 1042878; scientific name: Myxococcus xanthus DZ2; NCBI TaxID: 1198133; scientific name: Rhodopseudomonas palustris; NCBI TaxID: 1076; scientific name: Chryseobacterium indologenes; NCBI TaxID: 253; scientific name: Sulfobacillus thermosulfidooxidans; NCBI TaxID: 28034; scientific name: Dorea longicatena DSM 13814; NCBI TaxID: 411462; scientific name: Bacteroides fragilis (strain 638R); NCBI TaxID: 862962; scientific name: Bifidobacterium bifidum DSM 20456 = JCM 1255; NCBI TaxID: 500634; scientific name: Alcaligenes faecalis; NCBI TaxID: 511; scientific name: Bacillus subtilis subsp. subtilis str. NCIB 3610; NCBI TaxID: 535026; scientific name: Paracoccus denitrificans; NCBI TaxID: 266; scientific name: Rhodococcus sp. (strain RHA1); NCBI TaxID: 101510; scientific name: Ruminococcus gnavus ATCC 29149; NCBI TaxID: 411470; scientific name: Coprococcus comes ATCC 27758; NCBI TaxID: 470146; scientific name: Mycobacterium smegmatis; NCBI TaxID: 1772; scientific name: Paenibacillus polymyxa ATCC 842; NCBI TaxID: 1036171; scientific name: Pseudomonas putida KT2440; NCBI TaxID: 160488; scientific name: Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12); NCBI TaxID: 391904; scientific name: unclassified Bacteria; NCBI TaxID: 2323; scientific name: Streptococcus agalactiae; NCBI TaxID: 1311; scientific name: Acidiphilium cryptum (strain JF-5); NCBI TaxID: 349163; scientific name: Synechococcus elongatus (strain PCC 7942) (Anacystis nidulans R2); NCBI TaxID: 1140; scientific name: Bacillus cereus (strain ATCC 14579 / DSM 31); NCBI TaxID: 226900; scientific name: Lactobacillus casei subsp. casei ATCC 393; NCBI TaxID: 219334; scientific name: Delftia acidovorans (strain DSM 14801 / SPH-1); NCBI TaxID: 398578; scientific name: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482); NCBI TaxID: 226186; scientific name: Streptomyces griseorubens; NCBI TaxID: 66897; scientific name: bacteria; NCBI TaxID: 1798193; scientific name: Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter); NCBI TaxID: 358; scientific name: Algoriphagus marincola HL-49; NCBI TaxID: 1305737; |
ModificationList | Acetyl |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2017-02-04 13:33:51 | ID requested | |
⏵ 1 | 2017-10-17 02:38:27 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
curator keyword: Biological |
submitter keyword: acetylation, phyloproteomics, bacteria |
Contact List
Samuel H Payne |
contact affiliation | Pacific Northwest National Laboratory, USA |
contact email | samuel.payne@pnnl.gov |
lab head | |
Matthew Monroe |
contact affiliation | Biological Separations & Mass Spectrometry |
contact email | matthew.monroe@pnl.gov |
dataset submitter | |
Full Dataset Link List
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD005851
- Label: PRIDE project
- Name: Acetylation of Diverse Bacteria