PXD005841

PXD005841 is an original dataset announced via ProteomeXchange.

Title	OsNOA1 functions in a threshold-dependent manner to regulate chloroplast proteins in rice at lower temperatures
Description	While our earlier microarray analysis identified a number of possible candidate genes, which may be involved in OsNOA1 function (Yang et al., 2011a), a complementary study of the rice proteome profiles under the same condition has the potential to yield new insights into the biological functions of NOA1 and molecular mechanism of NOA1 associated regulation. In this study, we utilized previously-generated OsNOA1 RNAi lines (Yang et al., 2011a) and newly-generated OsNOA1 overexpression lines to further investigate the function and mechanism of NOA1 in rice. Here we report the proteome changes which include important candidate proteins involved in chloroplast ribosome biogenesis and several classes of proteins with significant changes in response to various levels of OsNOA1 under two different temperature conditions. Our results suggest that OsNOA1 can function in a threshold-dependent manner to regulate the biosynthesis of chloroplast proteins in rice at lower temperatures, and this regulation may be achieved via interactions between NOA1 and chloroplast ribosomes.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:35:29.091.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Han He
SpeciesList	scientific name: Oryza sativa (Rice); NCBI TaxID: 4530;
ModificationList	TMT6plex-126 reporter+balance reagent acylated residue; methylthiolated residue; iodoacetamide derivatized residue; deamidated residue
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2017-02-03 04:48:02	ID requested
1	2018-03-02 00:31:01	announced
2	2018-03-21 01:16:55	announced	Updated publication reference for PubMed record(s): 29548275.
⏵ 3	2024-10-22 04:35:36	announced	2024-10-22: Updated project metadata.

He H, Yang Q, Shen B, Zhang S, Peng X, OsNOA1 functions in a threshold-dependent manner to regulate chloroplast proteins in rice at lower temperatures. BMC Plant Biol, 18(1):44(2018) [pubmed]

10.1186/s12870-018-1258-9;

curator keyword: Biological

submitter keyword: Quantitative proteomics, Rice, TMT, NOA1, Threshold-dependent,Chloroplast

Xin-Xiang Peng
contact affiliation	State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, China
contact email	xpeng@scau.edu.cn
lab head
Han He
contact affiliation	SCAU
contact email	hehanhenry@163.com
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD005841
     1. Label: PRIDE project
     2. Name: OsNOA1 functions in a threshold-dependent manner to regulate chloroplast proteins in rice at lower temperatures