PXD005841 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | OsNOA1 functions in a threshold-dependent manner to regulate chloroplast proteins in rice at lower temperatures |
Description | While our earlier microarray analysis identified a number of possible candidate genes, which may be involved in OsNOA1 function (Yang et al., 2011a), a complementary study of the rice proteome profiles under the same condition has the potential to yield new insights into the biological functions of NOA1 and molecular mechanism of NOA1 associated regulation. In this study, we utilized previously-generated OsNOA1 RNAi lines (Yang et al., 2011a) and newly-generated OsNOA1 overexpression lines to further investigate the function and mechanism of NOA1 in rice. Here we report the proteome changes which include important candidate proteins involved in chloroplast ribosome biogenesis and several classes of proteins with significant changes in response to various levels of OsNOA1 under two different temperature conditions. Our results suggest that OsNOA1 can function in a threshold-dependent manner to regulate the biosynthesis of chloroplast proteins in rice at lower temperatures, and this regulation may be achieved via interactions between NOA1 and chloroplast ribosomes. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_04:35:29.091.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Han He |
SpeciesList | scientific name: Oryza sativa (Rice); NCBI TaxID: 4530; |
ModificationList | TMT6plex-126 reporter+balance reagent acylated residue; methylthiolated residue; iodoacetamide derivatized residue; deamidated residue |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2017-02-03 04:48:02 | ID requested | |
1 | 2018-03-02 00:31:01 | announced | |
2 | 2018-03-21 01:16:55 | announced | Updated publication reference for PubMed record(s): 29548275. |
⏵ 3 | 2024-10-22 04:35:36 | announced | 2024-10-22: Updated project metadata. |
Publication List
He H, Yang Q, Shen B, Zhang S, Peng X, OsNOA1 functions in a threshold-dependent manner to regulate chloroplast proteins in rice at lower temperatures. BMC Plant Biol, 18(1):44(2018) [pubmed] |
10.1186/s12870-018-1258-9; |
Keyword List
curator keyword: Biological |
submitter keyword: Quantitative proteomics, Rice, TMT, NOA1, Threshold-dependent,Chloroplast |
Contact List
Xin-Xiang Peng |
contact affiliation | State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou, China |
contact email | xpeng@scau.edu.cn |
lab head | |
Han He |
contact affiliation | SCAU |
contact email | hehanhenry@163.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD005841
- Label: PRIDE project
- Name: OsNOA1 functions in a threshold-dependent manner to regulate chloroplast proteins in rice at lower temperatures