PXD005778 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteomics of copepods during diel vertical migration |
Description | One of the greatest cyclical patterns in the pelagic ecosystem is the daily vertical migration of various zooplankton and fish to depth, a process referred to as diel vertical migration (DVM). DVM is considered to be energetically costly as tiny plankton migrate hundreds of meters in a 24 hour period. To study the metabolic demands of DVM, the copepod Pleuromamma xiphias was collected during upwards and downwards migration off of Bermuda. Data-dependent acquisition on the Q-Exactive detected >1600 proteins, 180 of which were differentially abundant between the two sampling periods. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_04:35:53.708.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Emma Timmins-Schiffman |
SpeciesList | scientific name: Pleuromamma xiphias; NCBI TaxID: 503034; |
ModificationList | No PTMs are included in the dataset |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2017-01-25 01:49:59 | ID requested | |
1 | 2017-02-02 01:29:44 | announced | |
2 | 2017-06-20 05:44:50 | announced | Updated project metadata. |
⏵ 3 | 2024-10-22 04:35:54 | announced | 2024-10-22: Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
curator keyword: Biological |
submitter keyword: proteomics, DVM,copepod, DDA |
Contact List
Amy Maas |
contact affiliation | Bermuda Institute of Ocean Sciences |
contact email | amy.maas@bios.edu |
lab head | |
Emma Timmins-Schiffman |
contact affiliation | University of Washington |
contact email | emsie25@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/02/PXD005778 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD005778
- Label: PRIDE project
- Name: Proteomics of copepods during diel vertical migration