PXD005749

PXD005749 is an original dataset announced via ProteomeXchange.

Title	SWATH-MS Proteomics Analysis of Persicaria minor herb upon Methyl Jasmonate elicitation
Description	Stresses from either biotic or abiotic origins can have significant impact towards plant physiology and molecular regulation. Jasmonate acid (JA) and its derivative, methyl JA (MeJA) are hormonal cues released by plants which signal defensive response to curb the damage from such stresses. In an attempt to study the defensive response, a tropical herbal plant, Persicaria minor (P. minor) which is known for its pungent smell as well as various bioactivities including antimicrobial and anti-cancer, has been treated with MeJA to invoke the stress signaling. Such elicitation has been performed in various plants such as Arabidopsis, rice and hairy root cultures of certain herbs, yet how MeJA directly influenced the proteome of a herbal species particularly P. minor has not been previously elucidated. In this study, P. minor plants was exogenously treated with MeJA and its proteome was investigated using a new proteomics approach called SWATH-MS.
HostingRepository	PRIDE
AnnounceDate	2018-06-25
AnnouncementXML	Submission_2018-09-10_03:04:42.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Wan Aizat
SpeciesList	scientific name: Persicaria minor; NCBI TaxID: 488003;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	TripleTOF 5600

Revision	Datetime	Status	ChangeLog Entry
0	2017-01-20 02:22:27	ID requested
1	2018-06-25 08:45:05	announced
⏵ 2	2018-09-10 03:04:44	announced	Updated publication reference for PubMed record(s): 29854898, 30186693.

Aizat WM, Ibrahim S, Rahnamaie-Tajadod R, Loke KK, Goh HH, Noor NM, herb upon methyl jasmonate treatment. Data Brief, 16():1091-1094(2018) [pubmed]

Aizat WM, Ibrahim S, Rahnamaie-Tajadod R, Loke KK, Goh HH, Noor NM, leaves upon methyl jasmonate elicitation. PeerJ, 6():e5525(2018) [pubmed]

curator keyword: Biological

submitter keyword: Kesum, Polygonum minus, methyl jasmonate

Dr. Wan Mohd Aizat
contact affiliation	Institute of Systems Biology (INBIOSIS), University Kebangsaan Malaysia (UKM), 43600 Bangi, Selangor, Malaysia
contact email	wma@ukm.edu.my
lab head
Wan Aizat
contact affiliation	Institute of Systems Biology (INBIOSIS), Universiti Kebangsaan Malaysia (UKM), Bangi, Selangor, Malaysia
contact email	wma@ukm.edu.my
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/06/PXD005749

PRIDE project URI

• PRIDE
  1. PXD005749
     1. Label: PRIDE project
     2. Name: SWATH-MS Proteomics Analysis of Persicaria minor herb upon Methyl Jasmonate elicitation