PXD005696

PXD005696 is an original dataset announced via ProteomeXchange.

Title	Proteomics of Matrigel, LC-MS/MS
Description	ECM is the physicochemical support for the cells living in the tissue microenvironment. it is important to know the protein contents within the ECM that are critical for extra- and intracellular signaling, cell growth, migration, cell-cell/ECM interactions. The ECM gel derived from the Engelbreth-Holm-Swarm murine sarcoma (commonly known as Matrigel or lrECM) purchased from the Sigma Aldrich in the liquid concentration of 8-12 mg/ml (Lot # 064M4075V) was used for the LC-MS/MS analysis and to prepare the 3D scaffolds used for downstream experiments. The Matrigel mass spectrometry data will be used to compare with those of the decellularized mice mammary tissue ECM/DBT-TMS.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:34:36.148.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD005696
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Weimin Li
SpeciesList	scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationList	Deamidated; Oxidation; Carbamidomethyl
Instrument	LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2017-01-12 03:00:18	ID requested
1	2018-10-26 10:38:13	announced
⏵ 2	2024-10-22 04:34:43	announced	2024-10-22: Updated project metadata.

Rijal G, Li W, A versatile 3D tissue matrix scaffold system for tumor modeling and drug screening. Sci Adv, 3(9):e1700764(2017) [pubmed]

10.1126/sciadv.1700764;

10.6019/PXD005696;

curator keyword: Biomedical

submitter keyword: ECM, TMS,Matrigel, Tissue matrix scaffold, LC-MS/MS

Weimin Li
contact affiliation	Elson S. Floyd College of Medicine, Washington State University Spokane
contact email	weimin.li@wsu.edu
lab head
Weimin Li
contact affiliation	Washington State University Spokane
contact email	weimin.li@wsu.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD005696

PRIDE project URI

• PRIDE
  1. PXD005696
     1. Label: PRIDE project
     2. Name: Proteomics of Matrigel, LC-MS/MS