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PXD005685

PXD005685 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleMetal-directed metal oxide chromatography augmented the coverage of phosphoproteome
DescriptionPhosphosites cluster, a set of co-regulation sites, extends a variety of protein function via the distinct combination of phosphorylation events. The coordination of proximal multisite phosphorylation is a universal mechanism to regulate protein function, activity, and interaction pattern. The common method for efficiently separating heterogeneous types of phosphopeptides is insufficient thereby hampering the complete mapping of phosphoproteome. By taking the advantages of distinct binding affinities of Ga2O3 and TiO2 toward phosphopeptides under the same buffer condition, we present a simple and rapid strategy, metal-directed metal oxide chromatography (MD-MOC), for sequential separation of singly and multiply phosphorylated peptides. Among the 6,585 phosphopeptides identified from PC9 cells, up to 92% was uniquely enriched in either the first Ga2O3 or subsequent TiO2 fractions and more than 90 % of phosphopeptides in Ga2O3 fraction were multiply phosphorylated peptide, demonstrating the high complementary properties of these two materials. The high separation efficiency (<10% overlapping of identified phosphopeptides) results in a 1.9-fold superior phosphoproteomic coverage compared to conventional TiO2-based MOC in PC9 cells. Finally, the MD-MOC approach was applied to the large-scale phosphoproteomic profiling of ten mouse organ tissues allowed the identification of 42,086 unique phosphopeptides from 6,669 phosphoproteins using single-shot LC/MS/MS analysis. To our knowledge, the identification of 14,854 multiply phosphorylated peptides presented the largest dataset for multiply phosphorylated peptide from rodent tissues to date. Also, around half identified novel phosphosites (n=2,752) were uniquely came from the multiply phosphorylated peptide dataset further emphasizing the need of improving the detection sensitivity of multiply phosphorylated peptides. Given the good separation ability, stable reproducibility, and ease of tip-based preparation, this MD-MOC presents a sensitive approach for deep phosphoproteome identification and quantification from limited sample for shedding light on in vivo phosphoregulations.
HostingRepositoryjPOST
AnnounceDate2018-01-11
AnnouncementXMLSubmission_2022-09-18_02:21:22.020.xml
DigitalObjectIdentifier
ReviewLevelNon peer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterMiao-Hsia Lin
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationListS-carboxamidomethyl-L-cysteine; O4'-phospho-L-tyrosine; O-phospho-L-serine; O-phospho-L-threonine; L-methionine sulfoxide; alpha-amino acetylated residue
InstrumentLTQ Orbitrap Elite; Orbitrap Fusion
Dataset History
RevisionDatetimeStatusChangeLog Entry
02017-01-10 11:11:57ID requested
12018-01-10 07:00:05announced
22018-09-18 23:53:18announcedUpdated CV, FTP location and Modification list.
32021-02-04 16:45:49announced2021-02-04: Updated FTP location.
42022-09-18 02:21:22announced2022-09-18: Updated FTP location.
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: Metal Oxide Chromatography, phosphoproteomics
Contact List
Yu-Ju Chen
lab head
Miao-Hsia Lin
contact affiliationInstitute of Chemistry, Academia Sinica
dataset submitter
Full Dataset Link List
jPOST dataset URI
Dataset FTP location
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