PXD005648

PXD005648 is an original dataset announced via ProteomeXchange.

Title	Proteomic analysis of eleven tissues of Chinese Giant Salamander (Andrias davidianus)
Description	The Chinese giant salamander (CGS, Andrias davidianus) is the largest and longest-lived amphibian. Global and quantitative proteome analysis of multiple tissues would indicate tissue-specific mechanisms and investigate the function of each protein from a whole-organism perspective. Herein, this study performed proteome analysis of eleven tissues collected from adult female CGS using isobaric tags for relative and absolute quantitation (iTRAQ) coupled with LC-MS/MS methods. Based on the predicted protein database from CGS transcriptome database previously obtained, we identified a total of 4607 proteins with quantitative information. Among them, 2153 proteins were shared by two iTRAQ 8-plex experiments with liver as common sample, and these proteins were used for subsequent analysis. Our data will be useful for future research into this large-genome species, as well as for vertebrate-wide comparative genomic, transcriptomic and proteomic studies.
HostingRepository	PRIDE
AnnounceDate	2019-11-18
AnnouncementXML	Submission_2019-11-18_01:33:03.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	cunshuan xu
SpeciesList	scientific name: Andrias davidianus; NCBI TaxID: 141262;
ModificationList	iTRAQ8plex-116 reporter+balance reagent acylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2017-01-03 05:23:54	ID requested
⏵ 1	2019-11-18 01:33:04	announced

Geng X, Guo J, Zang X, Chang C, Shang H, Wei H, Xu C, Proteomic analysis of eleven tissues in the Chinese giant salamander (Andrias davidianus). Sci Rep, 9(1):16415(2019) [pubmed]

curator keyword: Biological

submitter keyword: Chinese Giant Salamander (Andrias davidianus), Organ tissue, iTRAQ, LC-MS/MS

Cunshuan Xu
contact affiliation	State Key Laboratory Cultivation Base for Cell Differentiation Regulation, Henan Normal University, Xinxiang, Henan Province, China
contact email	cellkeylab@126.com
lab head
cunshuan xu
contact affiliation	henan normal university
contact email	cellkeylab@126.com
dataset submitter

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PRIDE project URI

• PRIDE
  1. PXD005648
     1. Label: PRIDE project
     2. Name: Proteomic analysis of eleven tissues of Chinese Giant Salamander (Andrias davidianus)