PXD005642

PXD005642 is an original dataset announced via ProteomeXchange.

Title	MSstats splitplot method for protein quantitation in MS datasets
Description	Thirty commercial proteins were prepared at 1.5 pmol/µL in three different subsets of 10 proteins each. Proteins from these subsets were spiked to a 15-µg Escherichia coli background in different amounts and five different mixtures were prepared in triplicates. The final amount of each protein in each mixture was either 100, 200 or 400 fmol/µg of E. coli background for the subsets marked as 1, 2 and 4, respectively. The generated dataset with known concentrations of spiked-in proteins was used to evaluate the performance of several processing tools of MS proteomics datasets.
HostingRepository	PRIDE
AnnounceDate	2019-07-19
AnnouncementXML	Submission_2019-07-19_00:30:54.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Eduard Sabidó
SpeciesList	scientific name: Escherichia coli; NCBI TaxID: 562;
ModificationList	monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2017-01-03 02:37:16	ID requested
⏵ 1	2019-07-19 00:30:54	announced

Dataset with its publication pending

curator keyword: Technical

submitter keyword: MSstats, statistics, mass spectrometry, proteomics

Eduard Sabidó
contact affiliation	CRG/UPF Proteomics Unit, Centre de Regulació Genòmica, 08003 Barcelona, Spain
contact email	eduard.sabido@crg.cat
lab head
Eduard Sabidó
contact affiliation	Centre de Regulació Genòmica
contact email	eduard.sabido@crg.cat
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/07/PXD005642

PRIDE project URI

• PRIDE
  1. PXD005642
     1. Label: PRIDE project
     2. Name: MSstats splitplot method for protein quantitation in MS datasets