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PXD005630

PXD005630 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleZebrafish synaptic proteome - Evolution of complexity in the zebrafish synapse proteome
DescriptionThe proteome of human brain synapses is highly complex and mutated in over 130 diseases. This complexity arose from two whole genome duplications early in the vertebrate lineage. Zebrafish are used in modelling human diseases, however its synapse proteome is uncharacterised and whether the teleost-specific genome duplication (TSGD) influenced complexity is unknown. We report the first characterisation of the proteomes and ultrastructure of central synapses in zebrafish and analyse the importance of the TSGD. The TSGD increased overall synapse proteome complexity. The Post Synaptic Density (PSD) proteome of zebrafish had lower complexity than mammals and a highly conserved set of ~1000 proteins is shared across vertebrates. PSD ultrastructural features were also conserved. Lineage-specific proteome differences indicate vertebrate species evolved distinct synapse types and functions. The datasets are a resource for a wide range of studies and have important implications for the use of zebrafish in modelling human synaptic diseases.
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_04:35:11.168.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterMark Collins
SpeciesList scientific name: Mus musculus (Mouse); NCBI TaxID: 10090; scientific name: Danio rerio (Zebrafish) (Brachydanio rerio); NCBI TaxID: 7955;
ModificationListiodoacetamide derivatized residue
InstrumentLTQ Orbitrap Velos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02017-01-02 06:52:44ID requested
12017-03-06 05:36:19announced
22024-10-22 04:35:18announced2024-10-22: Updated project metadata.
Publication List
Bay, é, s À, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A, Choudhary JS, Emes RD, Grant SG, Evolution of complexity in the zebrafish synapse proteome. Nat Commun, 8():14613(2017) [pubmed]
10.1038/ncomms14613;
Keyword List
curator keyword: Biological
submitter keyword: Synapse,Zebrafish, Evolution
Contact List
Mark Collins
contact affiliationUniversity of Sheffield
contact emailmark.collins@shefield.ac.uk
lab head
Mark Collins
contact affiliationUniversity of Sheffield
contact emailmark.collins@sheffield.ac.uk
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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