PXD005614 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Ave1 Homologs in Venturia pirina and Venturia inequalis |
Description | This dataset relates to a proteomic analysis of Ave1 homologs in the fungal pathogens Venturia pirina and Venturia inequalis. These species are the cause of scab disease on European pear (Pyrus communis) and apple (Malus pumila). Sample preparation for both V. pirina and V. inequalis was designed to focus on effectors and eliminate host proteins. To do this the fungi were grown in vitro, on cellophane sheets mimicing the growth habit in infected leaves and proteins were extracted using a gentle washing procedure designed to avoid cell wall breakage. LC-MS/MS data was queried against a protein database generated from gene predictions obtained from whole genome sequences of V. pirina and V. inequalis. |
HostingRepository | PRIDE |
AnnounceDate | 2023-11-14 |
AnnouncementXML | Submission_2023-11-14_08:49:10.040.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Ira Cooke |
SpeciesList | scientific name: Venturia inaequalis; NCBI TaxID: 5025; scientific name: Venturia pyrina; NCBI TaxID: 415593; |
ModificationList | monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue |
Instrument | Bruker Daltonics HCT Series; ultraflex; LTQ Orbitrap |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2016-12-21 02:31:18 | ID requested | |
1 | 2022-03-02 03:06:54 | announced | |
⏵ 2 | 2023-11-14 08:49:10 | announced | 2023-11-14: Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
curator keyword: Biological |
submitter keyword: Venturia inequalis, LC-MSMS, Ave1, Venturia pirina, Effectors |
Contact List
Ira R Cooke |
contact affiliation | James Cook University |
contact email | ira.cooke@jcu.edu.au |
lab head | |
Ira Cooke |
contact affiliation | James Cook University |
contact email | ira.cooke@jcu.edu.au |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/03/PXD005614 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD005614
- Label: PRIDE project
- Name: Ave1 Homologs in Venturia pirina and Venturia inequalis