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PXD005614

PXD005614 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleAve1 Homologs in Venturia pirina and Venturia inequalis
DescriptionThis dataset relates to a proteomic analysis of Ave1 homologs in the fungal pathogens Venturia pirina and Venturia inequalis. These species are the cause of scab disease on European pear (Pyrus communis) and apple (Malus pumila). Sample preparation for both V. pirina and V. inequalis was designed to focus on effectors and eliminate host proteins. To do this the fungi were grown in vitro, on cellophane sheets mimicing the growth habit in infected leaves and proteins were extracted using a gentle washing procedure designed to avoid cell wall breakage. LC-MS/MS data was queried against a protein database generated from gene predictions obtained from whole genome sequences of V. pirina and V. inequalis.
HostingRepositoryPRIDE
AnnounceDate2023-11-14
AnnouncementXMLSubmission_2023-11-14_08:49:10.040.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterIra Cooke
SpeciesList scientific name: Venturia inaequalis; NCBI TaxID: 5025; scientific name: Venturia pyrina; NCBI TaxID: 415593;
ModificationListmonohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
InstrumentBruker Daltonics HCT Series; ultraflex; LTQ Orbitrap
Dataset History
RevisionDatetimeStatusChangeLog Entry
02016-12-21 02:31:18ID requested
12022-03-02 03:06:54announced
22023-11-14 08:49:10announced2023-11-14: Updated project metadata.
Publication List
Dataset with its publication pending
Keyword List
curator keyword: Biological
submitter keyword: Venturia inequalis, LC-MSMS, Ave1, Venturia pirina, Effectors
Contact List
Ira R Cooke
contact affiliationJames Cook University
contact emailira.cooke@jcu.edu.au
lab head
Ira Cooke
contact affiliationJames Cook University
contact emailira.cooke@jcu.edu.au
dataset submitter
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Dataset FTP location
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PRIDE project URI
Repository Record List
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