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DataSet Summary

  • HostingRepository: PRIDE
  • AnnounceDate: 2017-04-20
  • AnnouncementXML: Submission_2017-04-20_01:50:47.xml
  • DigitalObjectIdentifier: http://dx.doi.org/10.6019/PXD005590
  • ReviewLevel: Peer-reviewed dataset
  • DatasetOrigin: Original data
  • RepositorySupport: Supported dataset by repository
  • PrimarySubmitter: XIAOMENG SHEN
  • Title: In-depth and reproducibly quantitation of benchmark dataset consiting of 20 files
  • Description: We prepared a benchmark dataset where the various levels of spikeed-in E. Coli proteome that true fold change (i.e. 1 fold, 1.5 fold, 2 fold, 2.5 fold and 3 fold) and true identities of positives/negatives (i.e. E.Coli proteins are true positives while Human proteins are true negatives) are known. To best mimic the proteomics application in comparison of multiple replicates, each fold change
  • SpeciesList: scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
  • ModificationList: Oxidation; Acetyl; Carbamidomethyl
  • Instrument: Orbitrap Fusion Lumos

Dataset History

VersionDatetimeStatusChangeLog Entry
02016-12-16 09:05:47ID requested
12017-04-20 01:50:48announced

Publication List

  1. Shen X, Shen S, Li J, Hu Q, Nie L, Tu C, Wang X, Orsburn B, Wang J, Qu J, An IonStar Experimental Strategy for MS1 Ion Current-Based Quantification Using Ultrahigh-Field Orbitrap: Reproducible, In-Depth, and Accurate Protein Measurement in Large Cohorts. J Proteome Res, 16(7):2445-2456(2017) [pubmed]

Keyword List

  1. curator keyword: Technical
  2. submitter keyword: human, E.coli, LC-MS

Contact List

    JUN QU
    • contact affiliation: Department of Pharmaceutical Sciences, University at Buffalo
    • contact email: JUNQU@BUFFALO.EDU
    • lab head:
    • contact affiliation: University at Buffalo
    • contact email: xiaomeng@buffalo.edu
    • dataset submitter:

Full Dataset Link List

  1. Dataset FTP location
  2. PRIDE project URI
Repository Record List
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