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PXD005590

PXD005590 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleIn-depth and reproducibly quantitation of benchmark dataset consiting of 20 files
DescriptionWe prepared a benchmark dataset where the various levels of spikeed-in E. Coli proteome that true fold change (i.e. 1 fold, 1.5 fold, 2 fold, 2.5 fold and 3 fold) and true identities of positives/negatives (i.e. E.Coli proteins are true positives while Human proteins are true negatives) are known. To best mimic the proteomics application in comparison of multiple replicates, each fold change
HostingRepositoryPRIDE
AnnounceDate2017-04-20
AnnouncementXMLSubmission_2017-04-20_01:50:47.xml
DigitalObjectIdentifierhttp://dx.doi.org/10.6019/PXD005590
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportSupported dataset by repository
PrimarySubmitterXIAOMENG SHEN
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListOxidation; Acetyl; Carbamidomethyl
InstrumentOrbitrap Fusion Lumos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02016-12-16 09:05:47ID requested
12017-04-20 01:50:48announced
Publication List
Shen X, Shen S, Li J, Hu Q, Nie L, Tu C, Wang X, Orsburn B, Wang J, Qu J, An IonStar Experimental Strategy for MS1 Ion Current-Based Quantification Using Ultrahigh-Field Orbitrap: Reproducible, In-Depth, and Accurate Protein Measurement in Large Cohorts. J Proteome Res, 16(7):2445-2456(2017) [pubmed]
Keyword List
curator keyword: Technical
submitter keyword: human, E.coli, LC-MS
Contact List
JUN QU
contact affiliationDepartment of Pharmaceutical Sciences, University at Buffalo
contact emailJUNQU@BUFFALO.EDU
lab head
XIAOMENG SHEN
contact affiliationUniversity at Buffalo
contact emailxiaomeng@buffalo.edu
dataset submitter
Full Dataset Link List
Dataset FTP location
PRIDE project URI
Repository Record List
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