PXD005582 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteomic Analysis of Lysine Succinylation in oryza sativa |
Description | By the combination of affinity enrichment and high-resolution LC-MS/MS analysis, large-scale lysine succinylome analysis was performed. Altogether, 742 lysine succinylation sites in 382 protein groups were identified. Intensive bioinformatic analyses were then carried out to annotate those identified lysine succinylated targets in response to drug treatment, including GO annotation, domain annotation, subcellular localization, KEGG pathway annotation, functional cluster analysis, etc. Based on the results, further studies following the lysine succinylome analysis were suggested |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_04:35:04.417.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Jones Macke |
SpeciesList | scientific name: Oryza sativa (Rice); NCBI TaxID: 4530; |
ModificationList | succinyl beta-aspartyl anhydride |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2016-12-16 01:56:03 | ID requested | |
1 | 2018-10-26 11:21:08 | announced | |
⏵ 2 | 2024-10-22 04:35:20 | announced | 2024-10-22: Updated project metadata. |
Publication List
10.1074/mcp.ra119.001426; |
10.1038/s41598-017-17756-6; |
Meng X, Xing S, Perez LM, Peng X, Zhao Q, Redo, ñ, a ED, Wang C, Peng Z, Proteome-wide Analysis of Lysine 2-hydroxyisobutyrylation in Developing Rice (Oryza sativa) Seeds. Sci Rep, 7(1):17486(2017) [pubmed] |
Meng X, Mujahid H, Zhang Y, Peng X, Redo, ñ, a ED, Wang C, Peng Z, Comprehensive Analysis of the Lysine Succinylome and Protein Co-modifications in Developing Rice Seeds. Mol Cell Proteomics, 18(12):2359-2372(2019) [pubmed] |
Keyword List
submitter keyword: oryza sativa succinylation |
Contact List
Xiaoxi Meng |
contact affiliation | Department of Biochemistry, Molecular Biology, Entomology & Plant Pathology |
contact email | xm56@msstate.edu |
lab head | |
Jones Macke |
contact affiliation | company |
contact email | xiaojun_peng@ptm-biolab.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD005582 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD005582
- Label: PRIDE project
- Name: Proteomic Analysis of Lysine Succinylation in oryza sativa