PXD005572

PXD005572 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Locus-specific Retention Predictor (LsRP)
Description	LsRP based on amino acid locus information and Support Vector Regression can be used to predict peptide retention time in LC-MS experiments.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:36:01.364.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Wenyuan Lu
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	iodoacetamide derivatized residue
Instrument	TripleTOF 5600

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2016-12-15 03:31:45	ID requested
1	2017-04-10 00:10:34	announced
⏵ 2	2024-10-22 04:36:09	announced	2024-10-22: Updated project metadata.

Publication List

Lu W, Liu X, Liu S, Cao W, Zhang Y, Yang P, Locus-specific Retention Predictor (LsRP): A Peptide Retention Time Predictor Developed for Precision Proteomics. Sci Rep, 7():43959(2017) [pubmed]
10.1038/srep43959;

Lu W, Liu X, Liu S, Cao W, Zhang Y, Yang P, Locus-specific Retention Predictor (LsRP): A Peptide Retention Time Predictor Developed for Precision Proteomics. Sci Rep, 7():43959(2017) [pubmed]

10.1038/srep43959;

Keyword List

ProteomeXchange project tag: Chromosome-centric Human Proteome Project (C-HPP), Biology/Disease-Driven Human Proteome Project (B/D-HPP), Human Proteome Project
curator keyword: Technical
submitter keyword: prediction, peptide retention,LC-MSMS

ProteomeXchange project tag: Chromosome-centric Human Proteome Project (C-HPP), Biology/Disease-Driven Human Proteome Project (B/D-HPP), Human Proteome Project

curator keyword: Technical

submitter keyword: prediction, peptide retention,LC-MSMS

Contact List

Pengyuan Yang
contact affiliation	Fudan University
contact email	pyyang@fudan.edu.cn
lab head
Wenyuan Lu
contact affiliation	Fudan University
contact email	14111510036@fudan.edu.cn
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/04/PXD005572
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/04/PXD005572

PRIDE project URI

Repository Record List

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