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PXD005563

PXD005563 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleComparative genomics reveals high biological diversity and specific adaptations in the fungal genus Aspergillus
DescriptionThe project compares the genomes of multiple Aspergillus species. In particular, the genes involved in the degradation of plant-derived biomass have been analyzed. As well, the extracellular proteins produced by the fungi during the utilization of sugar beet pulp and wheat bran were examined by LC-MS/MS. Results show that closely related species can deploy different enzyme mixtures in the hydrolysis of plant-derived biomass. These results imply that efficient hydrolysis of biomass can be achieved by combining enzyme mixtures from two or more fungi.
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_04:35:04.415.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterMarcos Di Falco
SpeciesList scientific name: Aspergillus versicolor; NCBI TaxID: 46472; scientific name: Aspergillus sydowii; NCBI TaxID: 75750; scientific name: Aspergillus foetidus var. acidus; NCBI TaxID: 288671; scientific name: Aspergillus wentii; NCBI TaxID: 5066; scientific name: Aspergillus brasiliensis; NCBI TaxID: 319629; scientific name: Aspergillus aculeatus ATCC 16872; NCBI TaxID: 690307; scientific name: Aspergillus carbonarius ITEM 5010; NCBI TaxID: 602072; scientific name: Aspergillus zonatus; NCBI TaxID: 41063; scientific name: Aspergillus tubingensis; NCBI TaxID: 5068;
ModificationListmonohydroxylated residue; iodoacetamide derivatized residue
InstrumentLTQ Orbitrap Velos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02016-12-14 00:43:26ID requested
12018-10-26 11:27:21announced
22024-10-22 04:35:09announced2024-10-22: Updated project metadata.
Publication List
10.1186/s13059-017-1151-0;
de Vries RP, Riley R, Wiebenga A, Aguilar-Osorio G, Amillis S, Uchima CA, Anderluh G, Asadollahi M, Askin M, Barry K, Battaglia E, Bayram Ö, Benocci T, Braus-Stromeyer SA, Caldana C, C, á, novas D, Cerqueira GC, Chen F, Chen W, Choi C, Clum A, Dos Santos RA, Dam, á, sio AR, Diallinas G, Emri T, Fekete E, Flipphi M, Freyberg S, Gallo A, Gournas C, Habgood R, Hainaut M, Harispe ML, Henrissat B, Hild, é, n KS, Hope R, Hossain A, Karabika E, Karaffa L, Kar, á, nyi Z, Kra, š, evec N, Kuo A, Kusch H, LaButti K, Lagendijk EL, Lapidus A, Levasseur A, Lindquist E, Lipzen A, Logrieco AF, MacCabe A, M, ä, kel, ä MR, Malavazi I, Melin P, Meyer V, Mielnichuk N, Miskei M, Moln, á, r Á P, Mul, é G, Ngan CY, Orejas M, Orosz E, Ouedraogo JP, Overkamp KM, Park HS, Perrone G, Piumi F, Punt PJ, Ram AF, Ram, ó, n A, Rauscher S, Record E, Ria, ñ, o-Pach, ó, n DM, Robert V, R, ö, hrig J, Ruller R, Salamov A, Salih NS, Samson RA, S, á, ndor E, Sanguinetti M, Sch, ü, tze T, Sep, č, i, ć K, Shelest E, Sherlock G, Sophianopoulou V, Squina FM, Sun H, Susca A, Todd RB, Tsang A, Unkles SE, van de Wiele N, van Rossen-Uffink D, Oliveira JV, Vesth TC, Visser J, Yu JH, Zhou M, Andersen MR, Archer DB, Baker SE, Benoit I, Brakhage AA, Braus GH, Fischer R, Frisvad JC, Goldman GH, Houbraken J, Oakley B, P, ó, csi I, Scazzocchio C, Seiboth B, vanKuyk PA, Wortman J, Dyer PS, Grigoriev IV, Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus. Genome Biol, 18(1):28(2017) [pubmed]
Keyword List
curator keyword: Biological
submitter keyword: extracellular proteins, biomass degradation,Aspergilli, LC-MS/MS
Contact List
Ronald de Vries
contact affiliationFungal Physiology, CBS-KNAW Fungal Biodiversity Centre Institute of the Royal Netherlands Academy of Arts and Sciences(KNAW) Fungal Molecular Physiology, Utrecht University The Netherlands
contact emailr.devries@cbs.knaw.nl
lab head
Marcos Di Falco
contact affiliationConcordia University
contact emailmarcos.difalco@concordia.ca
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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