PXD005563
PXD005563 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Comparative genomics reveals high biological diversity and specific adaptations in the fungal genus Aspergillus |
Description | The project compares the genomes of multiple Aspergillus species. In particular, the genes involved in the degradation of plant-derived biomass have been analyzed. As well, the extracellular proteins produced by the fungi during the utilization of sugar beet pulp and wheat bran were examined by LC-MS/MS. Results show that closely related species can deploy different enzyme mixtures in the hydrolysis of plant-derived biomass. These results imply that efficient hydrolysis of biomass can be achieved by combining enzyme mixtures from two or more fungi. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_04:35:04.415.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Marcos Di Falco |
SpeciesList | scientific name: Aspergillus versicolor; NCBI TaxID: 46472; scientific name: Aspergillus sydowii; NCBI TaxID: 75750; scientific name: Aspergillus foetidus var. acidus; NCBI TaxID: 288671; scientific name: Aspergillus wentii; NCBI TaxID: 5066; scientific name: Aspergillus brasiliensis; NCBI TaxID: 319629; scientific name: Aspergillus aculeatus ATCC 16872; NCBI TaxID: 690307; scientific name: Aspergillus carbonarius ITEM 5010; NCBI TaxID: 602072; scientific name: Aspergillus zonatus; NCBI TaxID: 41063; scientific name: Aspergillus tubingensis; NCBI TaxID: 5068; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2016-12-14 00:43:26 | ID requested | |
1 | 2018-10-26 11:27:21 | announced | |
⏵ 2 | 2024-10-22 04:35:09 | announced | 2024-10-22: Updated project metadata. |
Publication List
10.1186/s13059-017-1151-0; |
de Vries RP, Riley R, Wiebenga A, Aguilar-Osorio G, Amillis S, Uchima CA, Anderluh G, Asadollahi M, Askin M, Barry K, Battaglia E, Bayram Ö, Benocci T, Braus-Stromeyer SA, Caldana C, C, á, novas D, Cerqueira GC, Chen F, Chen W, Choi C, Clum A, Dos Santos RA, Dam, á, sio AR, Diallinas G, Emri T, Fekete E, Flipphi M, Freyberg S, Gallo A, Gournas C, Habgood R, Hainaut M, Harispe ML, Henrissat B, Hild, é, n KS, Hope R, Hossain A, Karabika E, Karaffa L, Kar, á, nyi Z, Kra, š, evec N, Kuo A, Kusch H, LaButti K, Lagendijk EL, Lapidus A, Levasseur A, Lindquist E, Lipzen A, Logrieco AF, MacCabe A, M, ä, kel, ä MR, Malavazi I, Melin P, Meyer V, Mielnichuk N, Miskei M, Moln, á, r Á P, Mul, é G, Ngan CY, Orejas M, Orosz E, Ouedraogo JP, Overkamp KM, Park HS, Perrone G, Piumi F, Punt PJ, Ram AF, Ram, ó, n A, Rauscher S, Record E, Ria, ñ, o-Pach, ó, n DM, Robert V, R, ö, hrig J, Ruller R, Salamov A, Salih NS, Samson RA, S, á, ndor E, Sanguinetti M, Sch, ü, tze T, Sep, č, i, ć K, Shelest E, Sherlock G, Sophianopoulou V, Squina FM, Sun H, Susca A, Todd RB, Tsang A, Unkles SE, van de Wiele N, van Rossen-Uffink D, Oliveira JV, Vesth TC, Visser J, Yu JH, Zhou M, Andersen MR, Archer DB, Baker SE, Benoit I, Brakhage AA, Braus GH, Fischer R, Frisvad JC, Goldman GH, Houbraken J, Oakley B, P, ó, csi I, Scazzocchio C, Seiboth B, vanKuyk PA, Wortman J, Dyer PS, Grigoriev IV, Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus. Genome Biol, 18(1):28(2017) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: extracellular proteins, biomass degradation,Aspergilli, LC-MS/MS |
Contact List
Ronald de Vries | |
---|---|
contact affiliation | Fungal Physiology, CBS-KNAW Fungal Biodiversity Centre Institute of the Royal Netherlands Academy of Arts and Sciences(KNAW) Fungal Molecular Physiology, Utrecht University The Netherlands |
contact email | r.devries@cbs.knaw.nl |
lab head | |
Marcos Di Falco | |
contact affiliation | Concordia University |
contact email | marcos.difalco@concordia.ca |
dataset submitter |
Full Dataset Link List
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD005563 |
PRIDE project URI |
Repository Record List
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