PXD005563

PXD005563 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Comparative genomics reveals high biological diversity and specific adaptations in the fungal genus Aspergillus
Description	The project compares the genomes of multiple Aspergillus species. In particular, the genes involved in the degradation of plant-derived biomass have been analyzed. As well, the extracellular proteins produced by the fungi during the utilization of sugar beet pulp and wheat bran were examined by LC-MS/MS. Results show that closely related species can deploy different enzyme mixtures in the hydrolysis of plant-derived biomass. These results imply that efficient hydrolysis of biomass can be achieved by combining enzyme mixtures from two or more fungi.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:35:04.415.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Marcos Di Falco
SpeciesList	scientific name: Aspergillus versicolor; NCBI TaxID: 46472; scientific name: Aspergillus sydowii; NCBI TaxID: 75750; scientific name: Aspergillus foetidus var. acidus; NCBI TaxID: 288671; scientific name: Aspergillus wentii; NCBI TaxID: 5066; scientific name: Aspergillus brasiliensis; NCBI TaxID: 319629; scientific name: Aspergillus aculeatus ATCC 16872; NCBI TaxID: 690307; scientific name: Aspergillus carbonarius ITEM 5010; NCBI TaxID: 602072; scientific name: Aspergillus zonatus; NCBI TaxID: 41063; scientific name: Aspergillus tubingensis; NCBI TaxID: 5068;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Velos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2016-12-14 00:43:26	ID requested
1	2018-10-26 11:27:21	announced
⏵ 2	2024-10-22 04:35:09	announced	2024-10-22: Updated project metadata.

Publication List

10.1186/s13059-017-1151-0;
de Vries RP, Riley R, Wiebenga A, Aguilar-Osorio G, Amillis S, Uchima CA, Anderluh G, Asadollahi M, Askin M, Barry K, Battaglia E, Bayram Ö, Benocci T, Braus-Stromeyer SA, Caldana C, C, á, novas D, Cerqueira GC, Chen F, Chen W, Choi C, Clum A, Dos Santos RA, Dam, á, sio AR, Diallinas G, Emri T, Fekete E, Flipphi M, Freyberg S, Gallo A, Gournas C, Habgood R, Hainaut M, Harispe ML, Henrissat B, Hild, é, n KS, Hope R, Hossain A, Karabika E, Karaffa L, Kar, á, nyi Z, Kra, š, evec N, Kuo A, Kusch H, LaButti K, Lagendijk EL, Lapidus A, Levasseur A, Lindquist E, Lipzen A, Logrieco AF, MacCabe A, M, ä, kel, ä MR, Malavazi I, Melin P, Meyer V, Mielnichuk N, Miskei M, Moln, á, r Á P, Mul, é G, Ngan CY, Orejas M, Orosz E, Ouedraogo JP, Overkamp KM, Park HS, Perrone G, Piumi F, Punt PJ, Ram AF, Ram, ó, n A, Rauscher S, Record E, Ria, ñ, o-Pach, ó, n DM, Robert V, R, ö, hrig J, Ruller R, Salamov A, Salih NS, Samson RA, S, á, ndor E, Sanguinetti M, Sch, ü, tze T, Sep, č, i, ć K, Shelest E, Sherlock G, Sophianopoulou V, Squina FM, Sun H, Susca A, Todd RB, Tsang A, Unkles SE, van de Wiele N, van Rossen-Uffink D, Oliveira JV, Vesth TC, Visser J, Yu JH, Zhou M, Andersen MR, Archer DB, Baker SE, Benoit I, Brakhage AA, Braus GH, Fischer R, Frisvad JC, Goldman GH, Houbraken J, Oakley B, P, ó, csi I, Scazzocchio C, Seiboth B, vanKuyk PA, Wortman J, Dyer PS, Grigoriev IV, Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus. Genome Biol, 18(1):28(2017) [pubmed]

10.1186/s13059-017-1151-0;

de Vries RP, Riley R, Wiebenga A, Aguilar-Osorio G, Amillis S, Uchima CA, Anderluh G, Asadollahi M, Askin M, Barry K, Battaglia E, Bayram Ö, Benocci T, Braus-Stromeyer SA, Caldana C, C, á, novas D, Cerqueira GC, Chen F, Chen W, Choi C, Clum A, Dos Santos RA, Dam, á, sio AR, Diallinas G, Emri T, Fekete E, Flipphi M, Freyberg S, Gallo A, Gournas C, Habgood R, Hainaut M, Harispe ML, Henrissat B, Hild, é, n KS, Hope R, Hossain A, Karabika E, Karaffa L, Kar, á, nyi Z, Kra, š, evec N, Kuo A, Kusch H, LaButti K, Lagendijk EL, Lapidus A, Levasseur A, Lindquist E, Lipzen A, Logrieco AF, MacCabe A, M, ä, kel, ä MR, Malavazi I, Melin P, Meyer V, Mielnichuk N, Miskei M, Moln, á, r Á P, Mul, é G, Ngan CY, Orejas M, Orosz E, Ouedraogo JP, Overkamp KM, Park HS, Perrone G, Piumi F, Punt PJ, Ram AF, Ram, ó, n A, Rauscher S, Record E, Ria, ñ, o-Pach, ó, n DM, Robert V, R, ö, hrig J, Ruller R, Salamov A, Salih NS, Samson RA, S, á, ndor E, Sanguinetti M, Sch, ü, tze T, Sep, č, i, ć K, Shelest E, Sherlock G, Sophianopoulou V, Squina FM, Sun H, Susca A, Todd RB, Tsang A, Unkles SE, van de Wiele N, van Rossen-Uffink D, Oliveira JV, Vesth TC, Visser J, Yu JH, Zhou M, Andersen MR, Archer DB, Baker SE, Benoit I, Brakhage AA, Braus GH, Fischer R, Frisvad JC, Goldman GH, Houbraken J, Oakley B, P, ó, csi I, Scazzocchio C, Seiboth B, vanKuyk PA, Wortman J, Dyer PS, Grigoriev IV, Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus. Genome Biol, 18(1):28(2017) [pubmed]

Keyword List

curator keyword: Biological
submitter keyword: extracellular proteins, biomass degradation,Aspergilli, LC-MS/MS

curator keyword: Biological

submitter keyword: extracellular proteins, biomass degradation,Aspergilli, LC-MS/MS

Contact List

Ronald de Vries
contact affiliation	Fungal Physiology, CBS-KNAW Fungal Biodiversity Centre Institute of the Royal Netherlands Academy of Arts and Sciences(KNAW) Fungal Molecular Physiology, Utrecht University The Netherlands
contact email	r.devries@cbs.knaw.nl
lab head
Marcos Di Falco
contact affiliation	Concordia University
contact email	marcos.difalco@concordia.ca
dataset submitter

Full Dataset Link List

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PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD005563

PRIDE project URI

Repository Record List

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