PXD005554

PXD005554 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Analysis of ECM-enriched samples using different methods
Description	Using LC-MS/MS, we analyzed ECM-enriched samples obtained from 1) human triple-negative breast cancer samples and matched adjacent normal mammary gland tissues, and 2) disease-free omentum from patient with non-metastatic ovarian cancer and high-grade- serous-ovarian- cancer-derived omental metastasis samples. We conducted the LC-MS/MS analysis on peptides obtained after solubilizing ECM-enriched samples using different methods (crude ECM extract, urea-soluble extract, urea-insoluble extract) and submitted to basic-reversed- phase separation or not.
HostingRepository	PRIDE
AnnounceDate	2024-08-29
AnnouncementXML	Submission_2024-08-29_08:49:33.987.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD005554
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Amanda Del Rosario
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	Phospho; Deamidated; Oxidation; Carbamyl; Carbamidomethyl; Gln->pyro-Glu
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2016-12-13 00:15:18	ID requested
1	2017-07-11 03:19:40	announced
⏵ 2	2024-08-29 08:49:36	announced	2024-08-29: Updated project metadata.

Publication List

10.6019/PXD005554;
Naba A, Pearce OMT, Del Rosario A, Ma D, Ding H, Rajeeve V, Cutillas PR, Balkwill FR, Hynes RO, Characterization of the Extracellular Matrix of Normal and Diseased Tissues Using Proteomics. J Proteome Res, 16(8):3083-3091(2017) [pubmed]
10.1021/acs.jproteome.7b00191;

10.6019/PXD005554;

Naba A, Pearce OMT, Del Rosario A, Ma D, Ding H, Rajeeve V, Cutillas PR, Balkwill FR, Hynes RO, Characterization of the Extracellular Matrix of Normal and Diseased Tissues Using Proteomics. J Proteome Res, 16(8):3083-3091(2017) [pubmed]

10.1021/acs.jproteome.7b00191;

Keyword List

curator keyword: Biomedical
submitter keyword: breast cancer, ovarian cancer,ECM, LC-MS/MS

curator keyword: Biomedical

submitter keyword: breast cancer, ovarian cancer,ECM, LC-MS/MS

Contact List

Amanda Del Rosario
contact affiliation	Massachusetts Institute of Technology
contact email	aweaver@mit.edu
lab head
Amanda Del Rosario
contact affiliation	Janssen Pharmaceuticals
contact email	adelros1@its.jnj.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/07/PXD005554
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/07/PXD005554

PRIDE project URI

Repository Record List

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