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PXD005411

PXD005411 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleMouse glycoproteome: Brain
DescriptionPrecise and large-scale characterization of glycoproteome is critical for understanding the biological functions of glycoproteins. Due to the complexity of glycosylation, the overall throughput, data quality and accessibility of site-specific glycosylation analysis are overwhelmingly lower than those of routine proteomic studies. Here, we introduce a workflow that robustly identifies intact glycopeptides at a proteome scale using stepped-energy mass-spectrometry (MS) and pGlyco 2.0, a dedicated search engine for large-scale glycopeptide analysis with comprehensive quality control (false discovery rate evaluation on the glycan, peptide and glycopeptide matches).
HostingRepositoryPRIDE
AnnounceDate2017-10-11
AnnouncementXMLSubmission_2017-10-10_23:55:29.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterpGlyco pFind
SpeciesList scientific name: Mus musculus (Mouse); NCBI TaxID: 10090;
ModificationListNo PTMs are included in the dataset
InstrumentLTQ Orbitrap
Dataset History
RevisionDatetimeStatusChangeLog Entry
02016-11-21 06:32:16ID requested
12017-10-10 23:55:31announced
Publication List
Liu MQ, Zeng WF, Fang P, Cao WQ, Liu C, Yan GQ, Zhang Y, Peng C, Wu JQ, Zhang XJ, Tu HJ, Chi H, Sun RX, Cao Y, Dong MQ, Jiang BY, Huang JM, Shen HL, Wong CCL, He SM, Yang PY, pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification. Nat Commun, 8(1):438(2017) [pubmed]
Keyword List
curator keyword: Biological
submitter keyword: Mouse glycoproteome
Contact List
Mingqi Liu
contact affiliationInstitutes of Biomedical Sciences and department of Chemistry, Fudan University, Shanghai, China
contact emailmingqiliu10@icloud.com
lab head
pGlyco pFind
contact affiliationInstitute of Computing Technology, CAS, Beijing, China
contact emailpglyco@ict.ac.cn
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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