PXD005305 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Comparative proteomics analysis of microalgae Prototheca associated with severe, mild and non-infectious strains |
Description | Three strains, P. zopfii genotype 1 (SAG 2063), P. zopfii genotype 2 (SAG 2021) and P. blaschkeae (SAG 2064) from the culture collection at the Institute of Animal Hygiene and Environmental Health, Freie Universität Berlin, Germany were cultured six times independently at 37°C in Sabouraud dextrose liquid medium until OD600 measurement reached 0.6 to 0.9. Following the cell harvest by brief centrifugation, the cells were lysed and label free quantitative proteomics analysis were carried out to investigate the differences between these strains. |
HostingRepository | PRIDE |
AnnounceDate | 2024-10-22 |
AnnouncementXML | Submission_2024-10-22_04:33:19.017.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Jayaseelan Murugaiyan |
SpeciesList | scientific name: Prototheca zopfii; NCBI TaxID: 3112; |
ModificationList | monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2016-11-09 05:27:23 | ID requested | |
1 | 2017-01-02 07:29:41 | announced | |
2 | 2017-10-24 04:14:31 | announced | Updated project metadata. |
⏵ 3 | 2024-10-22 04:33:27 | announced | 2024-10-22: Updated project metadata. |
Publication List
Murugaiyan J, Eravci M, Weise C, Roesler U, Label-Free Quantitative Proteomic Analysis of Harmless and Pathogenic Strains of Infectious Microalgae, Prototheca spp. Int J Mol Sci, 18(1):(2016) [pubmed] |
10.3390/ijms18010059; |
Keyword List
curator keyword: Biological |
submitter keyword: label free quantitative analysis, Prototheca blaschkeae, Perseus software,Prototheca, bovine masititis, Prototheca zopfii, comparative proteomic analysis, LTQ Orbitrap Velos mass spectrometer |
Maxquant |
Contact List
Jayaseelan Murugaiyan |
contact affiliation | Freie Universität Berlin, Centre for Infectious Medicine, Institute of Animal Hygiene and Environmental Health, Robert-von-Ostertag-Str. 7-13, 14163 Berlin, Germany. |
contact email | jayaseelan.murugaiyan@fu-berlin.de |
lab head | |
Jayaseelan Murugaiyan |
contact affiliation | Freie Universitaet-Berlin,Institute of Animal Hygiene and Environmental Health |
contact email | jayaseelan.murugaiyan@fu-berlin.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD005305
- Label: PRIDE project
- Name: Comparative proteomics analysis of microalgae Prototheca associated with severe, mild and non-infectious strains