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PXD005305

PXD005305 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleComparative proteomics analysis of microalgae Prototheca associated with severe, mild and non-infectious strains
DescriptionThree strains, P. zopfii genotype 1 (SAG 2063), P. zopfii genotype 2 (SAG 2021) and P. blaschkeae (SAG 2064) from the culture collection at the Institute of Animal Hygiene and Environmental Health, Freie Universität Berlin, Germany were cultured six times independently at 37°C in Sabouraud dextrose liquid medium until OD600 measurement reached 0.6 to 0.9. Following the cell harvest by brief centrifugation, the cells were lysed and label free quantitative proteomics analysis were carried out to investigate the differences between these strains.
HostingRepositoryPRIDE
AnnounceDate2024-10-22
AnnouncementXMLSubmission_2024-10-22_04:33:19.017.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterJayaseelan Murugaiyan
SpeciesList scientific name: Prototheca zopfii; NCBI TaxID: 3112;
ModificationListmonohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
InstrumentLTQ Orbitrap Velos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02016-11-09 05:27:23ID requested
12017-01-02 07:29:41announced
22017-10-24 04:14:31announcedUpdated project metadata.
32024-10-22 04:33:27announced2024-10-22: Updated project metadata.
Publication List
Murugaiyan J, Eravci M, Weise C, Roesler U, Label-Free Quantitative Proteomic Analysis of Harmless and Pathogenic Strains of Infectious Microalgae, Prototheca spp. Int J Mol Sci, 18(1):(2016) [pubmed]
10.3390/ijms18010059;
Keyword List
curator keyword: Biological
submitter keyword: label free quantitative analysis, Prototheca blaschkeae, Perseus software,Prototheca, bovine masititis, Prototheca zopfii, comparative proteomic analysis, LTQ Orbitrap Velos mass spectrometer
Maxquant
Contact List
Jayaseelan Murugaiyan
contact affiliationFreie Universität Berlin, Centre for Infectious Medicine, Institute of Animal Hygiene and Environmental Health, Robert-von-Ostertag-Str. 7-13, 14163 Berlin, Germany.
contact emailjayaseelan.murugaiyan@fu-berlin.de
lab head
Jayaseelan Murugaiyan
contact affiliationFreie Universitaet-Berlin,Institute of Animal Hygiene and Environmental Health
contact emailjayaseelan.murugaiyan@fu-berlin.de
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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