PXD005305

PXD005305 is an original dataset announced via ProteomeXchange.

Title	Comparative proteomics analysis of microalgae Prototheca associated with severe, mild and non-infectious strains
Description	Three strains, P. zopfii genotype 1 (SAG 2063), P. zopfii genotype 2 (SAG 2021) and P. blaschkeae (SAG 2064) from the culture collection at the Institute of Animal Hygiene and Environmental Health, Freie Universität Berlin, Germany were cultured six times independently at 37°C in Sabouraud dextrose liquid medium until OD600 measurement reached 0.6 to 0.9. Following the cell harvest by brief centrifugation, the cells were lysed and label free quantitative proteomics analysis were carried out to investigate the differences between these strains.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:33:19.017.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Jayaseelan Murugaiyan
SpeciesList	scientific name: Prototheca zopfii; NCBI TaxID: 3112;
ModificationList	monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2016-11-09 05:27:23	ID requested
1	2017-01-02 07:29:41	announced
2	2017-10-24 04:14:31	announced	Updated project metadata.
⏵ 3	2024-10-22 04:33:27	announced	2024-10-22: Updated project metadata.

Murugaiyan J, Eravci M, Weise C, Roesler U, Label-Free Quantitative Proteomic Analysis of Harmless and Pathogenic Strains of Infectious Microalgae, Prototheca spp. Int J Mol Sci, 18(1):(2016) [pubmed]

10.3390/ijms18010059;

curator keyword: Biological

submitter keyword: label free quantitative analysis, Prototheca blaschkeae, Perseus software,Prototheca, bovine masititis, Prototheca zopfii, comparative proteomic analysis, LTQ Orbitrap Velos mass spectrometer

Maxquant

Jayaseelan Murugaiyan
contact affiliation	Freie Universität Berlin, Centre for Infectious Medicine, Institute of Animal Hygiene and Environmental Health, Robert-von-Ostertag-Str. 7-13, 14163 Berlin, Germany.
contact email	jayaseelan.murugaiyan@fu-berlin.de
lab head
Jayaseelan Murugaiyan
contact affiliation	Freie Universitaet-Berlin,Institute of Animal Hygiene and Environmental Health
contact email	jayaseelan.murugaiyan@fu-berlin.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/01/PXD005305

PRIDE project URI

• PRIDE
  1. PXD005305
     1. Label: PRIDE project
     2. Name: Comparative proteomics analysis of microalgae Prototheca associated with severe, mild and non-infectious strains