PXD005303

PXD005303 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	In-depth proteome analysis of FFPE mammary secretory carcinoma specimens
Description	Mammary secretory carcinoma (MSC) is one of the rarest types of breast cancer accounting for less than 0.15% of all breast cancers. Traditionally, MSC is considered that it belongs to the phenotypic spectrum of basal-like triple-negative breast carcinoma (BL-TNBC). Here, we present a study of MSC formalin-fixed paraffin embedded (FFPE) tissue specimens using novel in-depth quantitative proteomic strategy.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:33:12.637.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Dohyun Han
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue; deamidated residue
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2016-11-09 04:58:20	ID requested
1	2018-02-27 05:56:35	announced
⏵ 2	2024-10-22 04:33:16	announced	2024-10-22: Updated project metadata.

Publication List

10.1002/prca.201700125;
Jin MS, Lee H, Woo J, Choi S, Do MS, Kim K, Song MJ, Kim Y, Park IA, Han D, Ryu HS, Integrated Multi-Omic Analyses Support Distinguishing Secretory Carcinoma of the Breast from Basal-Like Triple-Negative Breast Cancer. Proteomics Clin Appl, 12(5):e1700125(2018) [pubmed]

10.1002/prca.201700125;

Jin MS, Lee H, Woo J, Choi S, Do MS, Kim K, Song MJ, Kim Y, Park IA, Han D, Ryu HS, Integrated Multi-Omic Analyses Support Distinguishing Secretory Carcinoma of the Breast from Basal-Like Triple-Negative Breast Cancer. Proteomics Clin Appl, 12(5):e1700125(2018) [pubmed]

Keyword List

ProteomeXchange project tag: Breast Cancer
curator keyword: Biological
submitter keyword: TMT, FFPE, quantitative proteomics,secretory carcinoma

ProteomeXchange project tag: Breast Cancer

curator keyword: Biological

submitter keyword: TMT, FFPE, quantitative proteomics,secretory carcinoma

Contact List

Dohyun Han
contact affiliation	Proteomics core facility, Seoul National University Hospital
contact email	hdh03@snu.ac.kr
lab head
Dohyun Han
contact affiliation	Proteomics Core Facility, Biomedical Research Institute, Seoul National University Hospital
contact email	hdh03@snu.ac.kr
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/02/PXD005303
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/02/PXD005303

PRIDE project URI

Repository Record List

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