PXD005248

PXD005248 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Determination of pancreatic cyst fluids peptidome and proteome
Description	Determination of pancreatic cyst fluids (PCF) peptidome and proteome in 5 distinct patient groups: malignant (CAs), intraductal papillary mucinous neoplasms (IPMNs), mucinous cystic neoplasms (MCNs), serous cystic neoplasms (SCNs), and pseudocysts (PCs). The PCF <5kDa fraction, referred as the degradome, and proteome profiles were determined using a LTQ-Orbitrap Elite mass spectrometer coupled with a nanoAcquity LC system. Qualitative LC-MS/MS analyses were ran on pooled samples from all patients.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:33:32.000.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD005248
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Tymon Rubel
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	LTQ Orbitrap Elite

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2016-11-01 07:05:57	ID requested
1	2019-01-14 04:28:53	announced
⏵ 2	2024-10-22 04:33:40	announced	2024-10-22: Updated project metadata.

Publication List

10.6019/PXD005248;
10.1155/2018/7169595;
Paziewska A, Polkowski M, Rubel T, Karczmarski J, Wiechowska-Kozlowska A, Dabrowska M, Mikula M, Dadlez M, Ostrowski J, Mass Spectrometry-Based Comprehensive Analysis of Pancreatic Cyst Fluids. Biomed Res Int, 2018():7169595(2018) [pubmed]

10.6019/PXD005248;

10.1155/2018/7169595;

Paziewska A, Polkowski M, Rubel T, Karczmarski J, Wiechowska-Kozlowska A, Dabrowska M, Mikula M, Dadlez M, Ostrowski J, Mass Spectrometry-Based Comprehensive Analysis of Pancreatic Cyst Fluids. Biomed Res Int, 2018():7169595(2018) [pubmed]

Keyword List

submitter keyword: Human, pancreas, cyst fluids, degradome, proteome, LC-MS/MS

submitter keyword: Human, pancreas, cyst fluids, degradome, proteome, LC-MS/MS

Contact List

Jerzy Ostrowski
contact affiliation	Department of Gastroenterology, Hepatology and Clinical Oncology, Medical Center for Postgraduate Education; Warsaw, Poland Department of Genetics, Maria Sklodowska-Curie Memorial Cancer Center and Institute of Oncology; Warsaw, Poland
contact email	jostrow@warman.com.pl
lab head
Tymon Rubel
contact affiliation	Institute of Radioelectronics and Multimedia Technology Warsaw University of Technology
contact email	trubel@ire.pw.edu.pl
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD005248
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD005248

PRIDE project URI

Repository Record List

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