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PXD005174

PXD005174 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitlePhosphoproteomic data of HCT116 cells
DescriptionQuantitative phosphoproteome analyses of colorectal cancer cell lines (HCT116 metastatic clone and the parent clone without metastasis) were carried out using IMAC-based posphopeptide enrichment followed by SCX-RP-MS/MS with iTRAQ labeling(metastasis:iTRAQ116 or 117, no metastasis: iTRAQ114 or 115). The obtained results were searched against UniProt DB by Mascot, and the identified peptides were filtered at 1% FDR thresholds by searching against the randomized decoy DB at peptide level. This dataset with the PX complete submission format will be further used to generate a customized DB in this jPOST project.
HostingRepositoryjPOST
AnnounceDate2016-10-18
AnnouncementXMLSubmission_2022-09-18_03:11:30.944.xml
DigitalObjectIdentifierhttps://dx.doi.org/10.6019/PXD005174
ReviewLevelNon peer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportSupported dataset by repository
PrimarySubmitterMariko Ito
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListS-carboxamidomethyl-L-cysteine; L-methionine sulfoxide; iTRAQ4plex-116 reporter+balance reagent N6-acylated lysine; iTRAQ4plex-116 reporter+balance reagent acylated N-terminal; iTRAQ4plex-116 reporter+balance reagent O4'-acylated tyrosine; O-phospho-L-serine; O-phospho-L-threonine; O4'-phospho-L-tyrosine
InstrumentLTQ Orbitrap Velos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02016-10-17 08:15:21ID requested
12016-10-17 21:28:39announced
22017-03-30 23:37:44announcedUpdated Repository support.
32017-03-31 00:16:48announcedUpdated DigitalObjectIdentifier.
42018-09-18 23:45:11announcedUpdated CV, FTP location and Modification list.
52021-02-04 17:16:10announced2021-02-04: Updated FTP location.
62022-09-18 03:11:31announced2022-09-18: Updated FTP location.
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: colorectal cancer
FASP
IMAC
missing protein
phosphopeptide
PhosphoSitePlus
Contact List
Takeshi Tomonaga
lab head
Mariko Ito
contact affiliationKyoto Univ.
dataset submitter
Full Dataset Link List
jPOST dataset URI
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST000206/