PXD005060

PXD005060 is an original dataset announced via ProteomeXchange.

Title	Protein expression difference in Drosophila speciation
Description	We aim to determine the difference of protein expression in the closely related Drosophila species D.melanogaster and D.simulans to gain further insight into protein expression profiles of both species. Analysis of the protein levels might hint to pathways that have evolved into different direction and explain the separation of th species from their common ancestors. Further, we try to characterize novel gene isoform by combining RNA sequencing and proteomics.
HostingRepository	PRIDE
AnnounceDate	2019-02-25
AnnouncementXML	Submission_2019-02-25_01:21:18.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Andreas Schmidt
SpeciesList	scientific name: Drosophila melanogaster (Fruit fly); NCBI TaxID: 7227;
ModificationList	monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	TripleTOF 5600

Revision	Datetime	Status	ChangeLog Entry
0	2016-09-29 00:24:49	ID requested
⏵ 1	2019-02-25 01:21:19	announced

Ammar C, Berchtold E, Csaba G, Schmidt A, Imhof A, Zimmer R, Multi-Reference Spectral Library Yields Almost Complete Coverage of Heterogeneous LC-MS/MS Data Sets. J Proteome Res, 18(4):1553-1566(2019) [pubmed]

curator keyword: Biological

submitter keyword: drosophila speciation, novel slice variants, quantitative proteomics, shotgun proteomics

Axel Imhof
contact affiliation	Protein Analysis Unit, ZfP LMU Munich BioMedical Center Grosshaderner Strasse 9 82152 Planegg-Martinsried Tel. +49 89 2180 71804
contact email	imhof@lmu.de
lab head
Andreas Schmidt
contact affiliation	Adolf-Butenandt-Institut
contact email	A.Schmidt@med.uni-muenchen.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/02/PXD005060

PRIDE project URI

• PRIDE
  1. PXD005060
     1. Label: PRIDE project
     2. Name: Protein expression difference in Drosophila speciation