PXD005003 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Flax cell wall proteome |
Description | Proteomic analyses of four different flax organs/tissues (inner-stem, outer-stem, leaves and roots) enriched in proteins from 3 different sub-compartments (soluble-, membrane-, and cell wall-proteins) was combined with publically available data on flax seed and whole-stem proteins to generate a flax protein database containing 2996 non-redundant total proteins. Examination of the proteins present in different flax organs/tissues provided a detailed overview of cell wall metabolism and highlighted the importance of hemicellulose and pectin remodeling in stem tissues. |
HostingRepository | PRIDE |
AnnounceDate | 2017-07-19 |
AnnouncementXML | Submission_2017-07-19_00:49:42.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD005003 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Céline LECLERCQ |
SpeciesList | scientific name: linum usitatissimum; NCBI TaxID: 4006; |
ModificationList | dihydroxylated residue; (18)O label at both C-terminal oxygens; monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | TripleTOF 5600 |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2016-09-20 03:08:21 | ID requested | |
⏵ 1 | 2017-07-19 00:49:43 | announced | |
Publication List
Chabi M, Goulas E, Leclercq CC, de Waele I, Rihouey C, Cenci U, Day A, Blervacq AS, Neutelings G, Duponchel L, Lerouge P, Hausman JF, Renaut J, Hawkins S, A Cell Wall Proteome and Targeted Cell Wall Analyses Provide Novel Information on Hemicellulose Metabolism in Flax. Mol Cell Proteomics, 16(9):1634-1651(2017) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: Flax, LC-MSMS, cell wall |
Contact List
Dr Jenny Renaut |
contact affiliation | LIST_ERIN_ERTP Belvaux, LUXEMBOURG |
contact email | jenny.renaut@list.lu |
lab head | |
Céline LECLERCQ |
contact affiliation | LIST-ERIN-IB |
contact email | celine.leclercq@list.lu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/07/PXD005003 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD005003
- Label: PRIDE project
- Name: Flax cell wall proteome