PXD005003

PXD005003 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Flax cell wall proteome - A cell wall proteome and targeted cell wall analyses provide novel information on hemicellulose metabolism in flax
Description	Proteomic analyses of four different flax organs/tissues (inner-stem, outer-stem, leaves and roots) enriched in proteins from 3 different sub-compartments (soluble-, membrane-, and cell wall-proteins) was combined with publically available data on flax seed and whole-stem proteins to generate a flax protein database containing 2996 non-redundant total proteins. Examination of the proteins present in different flax organs/tissues provided a detailed overview of cell wall metabolism and highlighted the importance of hemicellulose and pectin remodeling in stem tissues.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:31:32.004.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD005003
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Céline LECLERCQ
SpeciesList	scientific name: linum usitatissimum; NCBI TaxID: 4006;
ModificationList	dihydroxylated residue; (18)O label at both C-terminal oxygens; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	TripleTOF 5600

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2016-09-20 03:08:21	ID requested
1	2017-07-19 00:49:43	announced
⏵ 2	2024-10-22 04:31:40	announced	2024-10-22: Updated project metadata.

Publication List

10.6019/PXD005003;
10.1074/mcp.M116.063727;
Chabi M, Goulas E, Leclercq CC, de Waele I, Rihouey C, Cenci U, Day A, Blervacq AS, Neutelings G, Duponchel L, Lerouge P, Hausman JF, Renaut J, Hawkins S, A Cell Wall Proteome and Targeted Cell Wall Analyses Provide Novel Information on Hemicellulose Metabolism in Flax. Mol Cell Proteomics, 16(9):1634-1651(2017) [pubmed]

10.6019/PXD005003;

10.1074/mcp.M116.063727;

Chabi M, Goulas E, Leclercq CC, de Waele I, Rihouey C, Cenci U, Day A, Blervacq AS, Neutelings G, Duponchel L, Lerouge P, Hausman JF, Renaut J, Hawkins S, A Cell Wall Proteome and Targeted Cell Wall Analyses Provide Novel Information on Hemicellulose Metabolism in Flax. Mol Cell Proteomics, 16(9):1634-1651(2017) [pubmed]

Keyword List

curator keyword: Biological
submitter keyword: LC-MSMS, cell wall,Flax

curator keyword: Biological

submitter keyword: LC-MSMS, cell wall,Flax

Contact List

Dr Jenny Renaut
contact affiliation	LIST_ERIN_ERTP Belvaux, LUXEMBOURG
contact email	jenny.renaut@list.lu
lab head
Céline LECLERCQ
contact affiliation	LIST-ERIN-ERTP-BEAP-HAU platform
contact email	celine.leclercq@list.lu
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/07/PXD005003
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/07/PXD005003

PRIDE project URI

Repository Record List

[ + ]