PXD004991

PXD004991 is an original dataset announced via ProteomeXchange.

Title	Analysis of oak stem lesions in Acute Oak Decline using shotgun proteomics
Description	Acute Oak Decline (AOD) is a decline-disease currently spreading in Britain, threatening oak trees. Here, we analyze and compare the proteomes of inner bark tissue sampled from oak stems of trees symptomatic with AOD and non-symptomatic trees.
HostingRepository	PRIDE
AnnounceDate	2018-02-07
AnnouncementXML	Submission_2018-02-07_12:15:37.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Martin Broberg
SpeciesList	scientific name: Quercus robur; NCBI TaxID: 38942; scientific name: Quercus petraea; NCBI TaxID: 38865;
ModificationList	TMT6plex-126 reporter+balance reagent acylated residue
Instrument	Orbitrap Fusion

Revision	Datetime	Status	ChangeLog Entry
0	2016-09-19 01:32:54	ID requested
⏵ 1	2018-02-07 12:15:39	announced

Broberg M, Doonan J, Mundt F, Denman S, McDonald JE, Integrated multi-omic analysis of host-microbiota interactions in acute oak decline. Microbiome, 6(1):21(2018) [pubmed]

curator keyword: Biological

submitter keyword: Oak Stem, Metaproteomics, Acute Oak Decline

James McDonald
contact affiliation	University of Bangor
contact email	j.mcdonald@bangor.ac.uk
lab head
Martin Broberg
contact affiliation	Bangor University
contact email	m.broberg@bangor.ac.uk
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/02/PXD004991

PRIDE project URI

• PRIDE
  1. PXD004991
     1. Label: PRIDE project
     2. Name: Analysis of oak stem lesions in Acute Oak Decline using shotgun proteomics