PXD004911

PXD004911 is an original dataset announced via ProteomeXchange.

Title	Mouse caecum vs faeces
Description	We compared the microbiota of paired mouse caecal contents and faeces by applying a multi-omic approach, including 16S rDNA sequencing, shotgun metagenomics, and shotgun metaproteomics. The aim of the study was to verify whether faecal samples are a reliable proxy for the mouse colonic luminal microbiota, as well as to identify changes in taxonomy and functional activity between caecal and faecal microbial communities, which have to be carefully considered when using stool as sample for mouse gut microbiota investigations.
HostingRepository	PRIDE
AnnounceDate	2017-10-24
AnnouncementXML	Submission_2017-10-24_04:06:41.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Alessandro Tanca
SpeciesList	scientific name: mouse gut metagenome; NCBI TaxID: 410661;
ModificationList	iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2016-09-10 15:22:31	ID requested
1	2017-03-31 01:21:32	announced
2	2017-06-20 05:44:36	announced	Updated project metadata.
⏵ 3	2017-10-24 04:06:42	announced	Updated project metadata.

Tanca A, Manghina V, Fraumene C, Palomba A, Abbondio M, Deligios M, Silverman M, Uzzau S, Metaproteogenomics Reveals Taxonomic and Functional Changes between Cecal and Fecal Microbiota in Mouse. Front Microbiol, 8():391(2017) [pubmed]

curator keyword: Metaproteomics, Biological

submitter keyword: gut microbiota, mouse, caecum, faeces, metaproteomics

Sergio Uzzau
contact affiliation	Porto Conte Ricerche, Alghero, Sardinia, Italy
contact email	uzzau@portocontericerche.it
lab head
Alessandro Tanca
contact affiliation	Proteomics Laboratory, Porto Conte Ricerche, Alghero, Italy
contact email	tanca@portocontericerche.it
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/03/PXD004911

PRIDE project URI

• PRIDE
  1. PXD004911
     1. Label: PRIDE project
     2. Name: Mouse caecum vs faeces