PXD004819

PXD004819 is an original dataset announced via ProteomeXchange.

Title	Terpenes a common language between fungi and bacteria
Description	Previously, we investigated the effect of fungal VOCs on the behavior of phylogenetically different soil bacteria (Schmidt et al 2015). In these experiments we showed that VOCs emitted by several fungi can lead to phenotypical responses in bacteria, for example, by inducing a change in motility (Schmidt et al 2015). We observed that the plant pathogenic fungus Fusarium culmorum produced a unique cluster of VOCs consisting primarily of terpenes. When exposed to the VOCs emitted by this fungus, the rhizobacterium Serratia plymuthica PRI-2C responded with an induction of motility. It is plausible that in soil, microorganisms sense changes in their environments via shifts in VOCs blend and adapt their behavior accordingly (Garbeva et al 2014). Although several studies indicated that VOCs can be used as signaling molecules in microbial inter-species interactions, the following questions remain unanswered as how are VOCs perceived as signals by the microorganisms and which regulatory pathways and genes are involved in the response? To answer these questions, the rhizosphere isolate S. plymuthica PRI-2C was grown alone or exposed to VOCs emitted by F. culmorum. The bacterial transcriptome and proteome were analyzed under each situation to identify the molecular basis of the bacterial response to fungal VOCs.
HostingRepository	PRIDE
AnnounceDate	2018-07-19
AnnouncementXML	Submission_2018-07-19_05:22:52.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Daniela Zuehlke
SpeciesList	scientific name: Serratia plymuthica PRI-2C; NCBI TaxID: 1154756;
ModificationList	2-pyrrolidone-5-carboxylic acid; monohydroxylated residue; deamidated residue; iodoacetamide derivatized residue
Instrument	Synapt MS

Revision	Datetime	Status	ChangeLog Entry
0	2016-08-16 01:56:33	ID requested
⏵ 1	2018-07-19 05:22:54	announced

Schmidt R, Jager V, Z, ü, hlke D, Wolff C, Bernhardt J, Cankar K, Beekwilder J, Ijcken WV, Sleutels F, Boer W, Riedel K, Garbeva P, Fungal volatile compounds induce production of the secondary metabolite Sodorifen in Serratia plymuthica PRI-2C. Sci Rep, 7(1):862(2017) [pubmed]

curator keyword: Biological

submitter keyword: Fungal-bacterial interactions

Volatile organic compounds

Terpenes, Transcriptomics

Proteomics

Metabolomics

Serratia plymuthica sp.

Fusarium culmorum sp.

Katharina Riedel
contact affiliation	Institute for Microbiology Department of Microbial Physiology and Molecular Biology University of Greifswald Friedrich-Ludwig-Jahnstr. 15 17489 Greifswald Germany
contact email	riedela@uni-greifswald.de
lab head
Daniela Zuehlke
contact affiliation	Ernst Moritz Arndt University Greifswald, Institute of Microbiology
contact email	zuehlke@uni-greifswald.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/07/PXD004819

PRIDE project URI

• PRIDE
  1. PXD004819
     1. Label: PRIDE project
     2. Name: Terpenes a common language between fungi and bacteria