PXD004785

PXD004785 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Proteogenomics reanalysis of human testis data
Description	Reanalysis of the human testis tissue dataset acquired for the Chromosome-centric Human Proteome Project (C-HPP; PRIDE project PXD002179), with a focus on identifying novel peptides for genome annotation.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:34:39.810.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD004785
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Hendrik Weisser
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	Glu->pyro-Glu; Deamidated; Oxidation; Acetyl; Carbamidomethyl; Gln->pyro-Glu
Instrument	LTQ Orbitrap Velos

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2016-08-13 08:39:34	ID requested
1	2016-11-28 07:50:20	announced
2	2016-11-29 00:49:17	announced	Updated publication reference for PubMed record(s): 27786492.
3	2017-01-17 07:32:29	announced	Updated project metadata.
⏵ 4	2024-10-22 04:34:40	announced	2024-10-22: Updated project metadata.

Publication List

10.6019/PXD004785;
Weisser H, Wright JC, Mudge JM, Gutenbrunner P, Choudhary JS, Flexible Data Analysis Pipeline for High-Confidence Proteogenomics. J Proteome Res, 15(12):4686-4695(2016) [pubmed]

10.6019/PXD004785;

Weisser H, Wright JC, Mudge JM, Gutenbrunner P, Choudhary JS, Flexible Data Analysis Pipeline for High-Confidence Proteogenomics. J Proteome Res, 15(12):4686-4695(2016) [pubmed]

Keyword List

submitter keyword: Human, Proteogenomics, Testis

submitter keyword: Human, Proteogenomics, Testis

Contact List

Jyoti Sharma Choudhary
contact affiliation	Proteomic Mass Spectrometry, Wellcome Trust Sanger Institute, United Kingdom
contact email	jc4@sanger.ac.uk
lab head
Hendrik Weisser
contact affiliation	Wellcome Trust Sanger Institute
contact email	hw5@sanger.ac.uk
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/11/PXD004785
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/11/PXD004785

PRIDE project URI

Repository Record List

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