PXD004763

PXD004763 is an original dataset announced via ProteomeXchange.

Title	Proteome analysis of Arabidopsis thaliana circadian clock mutants
Description	The circadian clock is comprised of proteins that form negative feedback loops, which regulate the timing of global gene expression in a coordinated 24 hour cycle. As a result, the plant circadian clock is responsible for regulating numerous physiological processes central to growth and survival. To date, most plant circadian clock studies have relied on diurnal transcriptome changes to elucidate molecular connections between the circadian clock and observable phenotypes in wild-type plants. Here, we have combined high-throughput RNA-sequencing and mass spectrometry to comparatively characterize the lhycca1, prr7prr9, gi and toc1 circadian clock mutant rosette transcriptome and proteome at the end-of-day and end-of-night.
HostingRepository	PRIDE
AnnounceDate	2018-01-02
AnnouncementXML	Submission_2018-01-02_04:37:36.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD004763
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Alexander Graf
SpeciesList	scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702;
ModificationList	Oxidation; Carbamidomethyl
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2016-08-11 07:19:16	ID requested
⏵ 1	2018-01-02 04:37:37	announced

Graf A, Coman D, Uhrig RG, Walsh S, Flis A, Stitt M, Gruissem W, circadian clock mutants reveals different scales of transcriptome and proteome regulation. Open Biol, 7(3):(2017) [pubmed]

curator keyword: Biological

submitter keyword: Arabidopsis thaliana, circadian clock, proteome, end of day, end of night, shotgun

Alexander Graf
contact affiliation	Research Group of Plant Proteomics, Max Planck Institute of Molecula Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany
contact email	graf@mpimp-golm.mpg.de
lab head
Alexander Graf
contact affiliation	Max Planck Institute of Molekular Plant Physiology
contact email	graf@mpimp-golm.mpg.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/01/PXD004763

PRIDE project URI

• PRIDE
  1. PXD004763
     1. Label: PRIDE project
     2. Name: Proteome analysis of Arabidopsis thaliana circadian clock mutants