PXD004749

PXD004749 is an original dataset announced via ProteomeXchange.

Title	Cross-Linked/Mass-spectrometry analysis of RNA-Polimerase II
Description	The data of a previous publication (Chen et.al. 2009 doi:10.1038/emboj.2009.401) where reprocesed and then used to validate false discovery rate calculations for unique residue pairs.
HostingRepository	PRIDE
AnnounceDate	2017-03-09
AnnouncementXML	Submission_2017-03-09_02:25:53.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Lutz Fischer
SpeciesList	scientific name: Saccharomyces cerevisiae (Baker's yeast); NCBI TaxID: 4932;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap

Revision	Datetime	Status	ChangeLog Entry
0	2016-08-10 05:44:09	ID requested
⏵ 1	2017-03-09 02:25:54	announced

Fischer L, Rappsilber J, Quirks of Error Estimation in Cross-Linking/Mass Spectrometry. Anal Chem, 89(7):3829-3833(2017) [pubmed]

curator keyword: Biological

submitter keyword: cross-linking, PolII, FDR

Juri Rappsilber
contact affiliation	Wellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, United Kingdom. Chair of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany.
contact email	juri.rappsilber@ed.ac.uk
lab head
Lutz Fischer
contact affiliation	University of Edinburgh
contact email	lfischer@staffmail.ed.ac.uk
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/03/PXD004749

PRIDE project URI

• PRIDE
  1. PXD004749
     1. Label: PRIDE project
     2. Name: Cross-Linked/Mass-spectrometry analysis of RNA-Polimerase II