PXD004732

PXD004732 is an original dataset announced via ProteomeXchange.

Title	ProteomeTools - Building ProteomeTools based on a complete synthetic human proteome
Description	The ProteomeTools project aims to derive molecular and digital tools from the human proteome to facilitate biomedical and life science research. Here, we describe the generation and multimodal LC-MS/MS analysis of >350,000 synthetic tryptic peptides representing nearly all canonical human gene products. This resource will be extended to 1.4 million peptides within two years and all data will be made available to the public in ProteomicsDB.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:35:40.312.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Daniel Zolg
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	Orbitrap Fusion ETD

Revision	Datetime	Status	ChangeLog Entry
0	2016-08-08 08:30:37	ID requested
1	2017-01-23 01:16:02	announced
2	2017-02-13 00:34:17	announced	Updated publication details.
3	2023-05-14 14:50:50	announced	2023-05-14: Updated project metadata.
⏵ 4	2024-10-22 04:35:45	announced	2024-10-22: Updated project metadata.

10.1038/nmeth.4153;

Zolg DP, Wilhelm M, Schnatbaum K, Zerweck J, Knaute T, Delanghe B, Bailey DJ, Gessulat S, Ehrlich HC, Weininger M, Yu P, Schlegl J, Kramer K, Schmidt T, Kusebauch U, Deutsch EW, Aebersold R, Moritz RL, Wenschuh H, Moehring T, Aiche S, Huhmer A, Reimer U, Kuster B, Building ProteomeTools based on a complete synthetic human proteome. Nat Methods, 14(3):259-262(2017) [pubmed]

ProteomeXchange project tag: Immunopeptidomics, Fragmentation intensity, EPIC-XS, Machine learning, Benchmarking, Proteometools, Retention time

submitter keyword: proteometools,synthetic, SRM, PRM, MRM, human proteome, peptides, spectral library

Bernhard Kuster
contact affiliation	Chair of Proteomics and Bioanalytics, Technische Universität München, Germany
contact email	kuster@tum.de
lab head
Daniel Zolg
contact affiliation	Technical University of Munich
contact email	daniel.zolg@tum.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2017/02/PXD004732

PRIDE project URI

• PRIDE
  1. PXD004732
     1. Label: PRIDE project
     2. Name: ProteomeTools - Building ProteomeTools based on a complete synthetic human proteome